Oncorhynchus kisutch (coho salmon): 109890368
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Entry
109890368 CDS
T09179
Name
(RefSeq) polypyrimidine tract-binding protein 1-like isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109890368
03041 Spliceosome [BR:
oki03041
]
109890368
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
109890368
Spliceosome [BR:
oki03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
109890368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
109890368
NCBI-ProteinID:
XP_031680070
Ensembl:
ENSOKIG00005019747
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All DBs
Position
LG5:complement(5055379..5066721)
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AA seq
574 aa
AA seq
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MEGHKLDADLYPMGPGYVTDIDVSVGTKRGSDELFSSYIMTPANGNDSKKFKGELRSPSA
PSRVIHLRQLPGDIQDSEVISMGMPFGKVTNLLMMKGKNQAFLEMNTVDQAQTMVNYYAT
VTPLIRQQPVFMQYSNHKELKTDNSPNQVRVQAALQAVNAVQGGTMLGSTMSGMGGVMGA
TMSVGGGEMGARGMATQSPVLRVIVENLFYPVTLEVLHQIFSKYGSVLKIITFTKNNQFQ
ALVQYADPMTAQHTKMSLDGQNIYNGCCTLRVSFSKLTSLNVKFNNDKSRDYTRPDLSTG
EQHNPQPGMDQHAMAAAAFGSPGLISASPYGHGFPQAFTLQQAAGLSMPGALASFGMGPG
GMAASRLGLQALGGGGGQAGVLLVSNLNPESVTPNCLFILFGVYGDVMRVKILFNKKDNA
LVQMADGTQAQLAMSHLNGVRLHGRSLRVSMSKHTTVQLPREGHEDQGLTKDYATSPLHR
FKKPGSKNYNNIYPPSGTLHLSNIPPAVGEEDLKALFSSSGASVTAFKFFQKDRKMALIQ
MSSVEEAVESLIEFHNHDLGDNHHLRVSFSKSTI
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggaaggacacaaattagatgctgatctgtatcctatgggacctggctacgtcacagac
atagatgtctcagtgggtaccaagaggggatctgatgaactcttctcctcctacatcatg
accccagccaacggtaatgacagtaagaagttcaaaggtgagctgcggagccccagcgct
ccatcgcgtgtcatccacctgcgccagctgcccggggacatccaggattctgaggtcatc
agcatgggaatgccctttgggaaggtcaccaaccttctgatgatgaagggaaagaaccag
gcgttcctggagatgaacactgtggaccaggctcagaccatggtgaactactacgctacg
gtcacccccctcatcagacagcagcctgtattcatgcagtacagcaaccacaaggaactc
aagactgacaactcgcctaaccaagtaagagtccaggcagcactgcaggcagtgaatgct
gtccagggtggcaccatgttgggctctaccatgtccggtatggggggtgtaatgggtgct
accatgtcagttggagggggagagatgggagccagaggcatggccacccagagccctgtc
cttagagtcatagtggaaaacctcttctaccccgtcacactggaagtcctgcaccagatc
ttctccaagtatgggtctgttctgaagatcatcaccttcactaagaacaaccagttccag
gctctggtccaatacgctgaccccatgacggcacagcacaccaaaatgtctctagacggt
cagaacatctataacggttgctgtactctgagggtgagtttctccaagctgaccagcctc
aacgtgaagtttaacaacgataagagccgtgactacaccagacctgacctttctactgga
gagcaacacaaccctcagcctggaatggaccagcacgcgatggctgctgccgccttcggg
tctccaggtctgatctcagcgtctccatatggacacggtttcccccaggccttcactcta
cagcaggcagcaggtttgtctatgcctggtgccttggcgtcattcggtatgggtccaggg
ggcatggccgctagtcgtctcggtctgcaagccctcggcggtggaggaggacaagctggc
gtgctattggtcagcaacctcaacccagagagcgttacaccaaactgcctctttattctc
tttggtgtgtatggcgacgtgatgagagtgaagattctgttcaataagaaggacaacgct
ctggtccagatggctgatggcacacaggctcagctagcaatgagccacctgaacggggtg
cgtctccatggtcggtctctacgtgtctccatgtctaaacacaccaccgtacagctgccc
agagaaggccatgaggaccaggggttgactaaggactatgccacctctcctctccaccgt
tttaagaagcctggctccaaaaactacaacaacatctaccctccctctggcacactgcac
ctctccaacatacctcctgcagtaggggaggaggatctgaaggcactgttcagcagttca
ggtgcttcagtcacggccttcaagttcttccagaaggaccgtaagatggctctgatccag
atgagctcagtggaggaagctgttgagagtctcatcgagttccacaaccatgacctggga
gataaccaccacctcagggtgtctttctccaaatctaccatctaa
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