Oncorhynchus kisutch (coho salmon): 109890604
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Entry
109890604 CDS
T09179
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109890604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
109890604
Enzymes [BR:
oki01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109890604
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
109890604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
zf-RING_UBOX
RING_XB3-XBAT31
TRIM_CC
zf-C3HC4_4
zf-C3HC4
PRY
zf-C3HC4_2
FN3_DSCAM-DSCAML_C
zf-RING_2
zf-C3HC4_3
Pur_ac_phosph_N
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
109890604
NCBI-ProteinID:
XP_020338139
Ensembl:
ENSOKIG00005050741
LinkDB
All DBs
Position
LG5:8014565..8049332
Genome browser
AA seq
685 aa
AA seq
DB search
MDALESELTCPICLELFEDPLLLPCAHSLCFGCAHRILVSHCASNEPVQSIGAFQCPTCR
YVISLSPQRGLEGLKRNVTLQNIIDRVQRAASSGPLALLPHSGPNSPSEDAGRFALALVP
ASTAMTSPGTPPSHVQCQFCEQDPPQNAVKTCVTCEVSYCDECLRATHPNKKPFTGHRLI
EPMPDCHLRGLQCLEHEEEKVNMYCVTDEQLICSLCKLVGRHRDHQVAALSDRFEKLKQA
LDSNLSHLVKRNNELEGLMGKLIQTCQHVEVNASRQEGKLMEECDLLIDIIQQRRQIIGT
KIKEGKAVRIRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKSITERVSMA
TASSQVLIPEINLTDTFDTFALDFTKEKKLLESLDYLTAPSPPGIREELCTASYDTITVH
WTSDDEFTVLSYELQYAIFTGQANIVSLCNSADSWMIVPNIKQNHYTVHGLQSGTKYIFI
VKAINQAGARSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETASKKGHGQERF
TSQSSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNSASWVLCRCNN
SWVVRHNSKELAIEPSPHLRRVGVLLDYDAGSLSFYDAVGSQHLHTFHVSFAQPVCPVFN
VWNKCLTVLTGLPIPEHLEGLETQN
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgctggagtcagagctgacttgcccaatctgcctcgagctctttgaggaccca
ctgctcctgccctgtgcccacagcctgtgcttcggctgcgcccatcgcatcctggtatcc
cactgcgcctccaacgagcccgtccagtccatcggagccttccagtgccccacctgccgc
tatgtcatctctctcagtccacagcgtggcctagaaggactgaaacgcaacgtcaccctc
cagaacatcatcgaccgcgtccagagggccgcctcctccggccccctggccctgctgccc
cacagcgggcccaactcccctagcgaggacgccgggcgattcgccctggccctggtcccc
gcctccaccgccatgaccagccccgggacgccgcccagccacgtgcagtgccagttctgc
gagcaggacccgccgcagaacgctgtcaagacgtgcgtgacatgcgaggtgtcatactgc
gacgagtgcctgcgtgccacgcaccccaataagaagcccttcacgggccaccgtctgatt
gagcccatgccggactgccacctgcgggggctgcagtgcctggagcacgaggaggagaaa
gtgaacatgtattgcgtcaccgacgaacagctcatctgctcgctgtgcaaactggtgggc
agacaccgagaccaccaggtggcggccttgagcgaccgcttcgagaaactcaagcaagcg
ttggattccaacctgagtcatttggtcaagaggaacaatgagttggaggggttgatggga
aagttgatccaaacctgtcaacatgtagaggtcaatgcatcgcggcaggagggaaagctg
atggaagaatgcgacctcctgattgacatcatccagcaaaggagacagatcattgggacc
aaaatcaaggaggggaaggcagtccggatcaggaagctagcccagcagatctccaactgt
aagcagtgcatcgaaaggtcctctgctctcatcacccaggctgaccagaccctgaaggag
acggaccacgcccgcttcctccagaccgccaagagtatcaccgaaagggtttccatggca
accgcctcctctcaggtcctgattccagagatcaacctgacagacacatttgacacgttc
gctctggacttcaccaaggagaagaagctgctggagagcctggactacctcacagcgcca
agtcctccaggcatcagagaagagctctgcactgcatcgtacgacaccatcaccgtccac
tggacctcagacgacgagttcacagtgctttcctatgagctccagtatgctatctttaca
gggcaagccaacattgtcagcctgtgtaactcagcagacagctggatgattgtgcctaac
atcaagcagaaccactacaccgtccacggcctgcagagcggcacgaagtacatcttcatc
gtcaaagccatcaaccaggcaggtgcccgcagcagtgagccagggacactcaaaaccaac
agccaaccattcaagctggaccccaagtccgcccacaagaagctgaaggtctcccatgac
aacctgacggtggagcgcgacgagacggcatcgaagaagggacacggccaggagcgcttc
accagccagagtagctacggagtcgtgggcaacgtttacatcgacagcggacgccactac
tgggaggccctgattggaggaagcacatggtatgcggtgggcatcgcctacaagtcggcc
cccaagcacgagtggatcggcaagaactcggcttcctgggtcctgtgccgctgcaacaac
tcgtgggtggtgcgccacaacagcaaggagctggccatcgagccttcgccccacctgcgc
cgcgtgggtgtcctgctggactacgacgccggctcgctttccttctacgacgccgtgggc
tcgcagcacctgcacacgttccacgtgtccttcgcccagcccgtgtgccccgtcttcaac
gtgtggaacaagtgtctgactgtcctcacgggtctgcccatccctgaacacctagaaggg
ttggaaacccagaactga
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