Oncorhynchus kisutch (coho salmon): 109890670
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Entry
109890670 CDS
T09179
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109890670
09123 Folding, sorting and degradation
03018 RNA degradation
109890670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109890670
03041 Spliceosome [BR:
oki03041
]
109890670
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109890670
mRNA cycle factors
Stress granule specific factors
109890670
Spliceosome [BR:
oki03041
]
Complex C
Other components
Complex C specific factors
109890670
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Nup35_RRM
RRM_7
RRM_3
Motif
Other DBs
NCBI-GeneID:
109890670
NCBI-ProteinID:
XP_031648227
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All DBs
Position
LG16:39434226..39439427
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AA seq
508 aa
AA seq
DB search
MNSLYVGDLHQNVTEADLNEMFSEAGPIFSVRVCRDRDTHCSLGYAYVNFYQQDDADRAL
LMFSNDMLEGRYLRIMRSDPDCTLRKSGVGNIFIKNLDKKSITNKNLYETFSAFGDIYSS
KVVCDENGHSKGYGYIQYKTQEAADRAIEKLNGMLMDNEKVFIEHFMSRKEREEVLGAKA
REFNNVFVKNLGRDTNDEKLIELFGKYGPTVSVKVMKDDNGKSSGFGFVCFERHEDAQRA
VNEMNRKELNGRLIYVGRAQKKAERQALLKLKFGQKKPDPKAKYRGVNLFVKNLDDAFDD
HRLRREFSAFGTIVSAKVMTESGRSKGFGFVSLSSPEEATKAVTEMNGRIVGTKPLYVAL
AQSKEQRQQYLADRYKQRLVSVMAVPNPIINSYQPPIPQVNPSFYSNVHIPQAQSHAAAY
YFSNQLAQLSSSPGMMTVERIATQALGQRPHHPASADAATAMSKPRNSTFAAGDGLRNNP
LLPTAVHIEVQEPHQAKAGQKSVPNTGA
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaattctttgtatgttggtgacctccaccaaaatgtcaccgaggcagacctaaacgag
atgtttagtgaggctggaccaatcttttctgttcgtgtatgtagggatcgggatacacat
tgttccctcgggtacgcctacgttaacttttatcagcaagacgatgctgatcgtgccctg
ctcatgttcagcaatgatatgctcgaaggaagatatctgcgcatcatgaggtctgatcct
gactgtaccctgaggaagagtggggtgggaaacatcttcatcaagaacctggacaagaag
tctataacaaacaaaaacctgtacgagaccttctcagcatttggagacatctactctagc
aaggtagtttgtgacgagaatggccattccaaaggttatggttatattcagtacaagacc
caggaggctgctgatagagccatcgagaaattaaatggcatgttaatggataacgaaaaa
gtgtttatcgagcactttatgtcacgcaaagagcgagaggaggtgcttggagccaaggcc
agagagttcaacaacgtgtttgtcaagaaccttggcagagacacgaacgatgagaaactg
attgagctttttgggaaatatggaccaaccgttagtgtcaaggttatgaaagacgataac
gggaagtcgagtgggttcggttttgtttgctttgagaggcatgaggatgcacagagagcc
gtgaacgagatgaacaggaaggagctaaacgggaggctgatatatgtaggccgcgcacag
aagaaagccgagcgccaggcgttgctgaaactcaagtttgggcagaagaagcctgacccc
aaggccaaatacagaggtgtaaatctctttgtaaagaacctggatgatgcctttgatgat
caccgtttaaggagggagttttctgcattcggaacaatcgtcagcgccaaggtgatgacg
gagagcgggcgcagcaaaggctttggctttgtttccctctcctcccccgaggaggccacc
aaggctgtgacggagatgaatggccgtattgtgggaaccaagccgctttacgtggccctg
gctcagagcaaggaacagcggcaacaatacctggcagaccggtacaagcagaggctggtc
agtgtcatggcagtgcccaaccccatcatcaactcctaccagcctcctattccacaggta
aatccatccttttactccaatgtacacattccacaggcccagtcccatgcagctgcctac
tacttcagcaaccaactggctcagctgagttccagccctggcatgatgaccgttgagcgg
atagcaactcaggccttgggccagcgcccacatcatcctgccagtgcagatgcagccact
gccatgagcaagcctcggaattcaacattcgcagctggcgatggcttacgcaataaccct
ctgctccccacggcagtccatattgaagtccaggagcctcaccaagctaaagccggacag
aaatctgtcccaaacactggagcttga
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