Oncorhynchus kisutch (coho salmon): 109890761
Help
Entry
109890761 CDS
T09179
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oki03036
]
109890761
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
109890761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
109890761
NCBI-ProteinID:
XP_031680524
Ensembl:
ENSOKIG00005025102
LinkDB
All DBs
Position
LG5:complement(22131150..22226111)
Genome browser
AA seq
3066 aa
AA seq
DB search
MHFSKLSWRFCVLGNKCREKAQCSATDALTGECCPDAVKVKRNMKIQKKDKQMSTTHLQK
YTPATAASNATAQNAQTPFPRGTLGSKDQIRDLGGGQTNHCMANSKHPRMCEASTSSVSP
CAPSSPLNSEEDDGGGGRWAKKKKKKKQKKKDKWGEPGSAWQHKGMERDMKPNKKREQKE
GKELLLLCNFKEPRKVKAPKEVKRGRKPKVQALPHPPSECKSAPSPPRQRGRKPREQVFQ
GPVPAEKKKKGKRKSEAVVQEAGERDNVAFLSALPIRGEESIDPLDNTKRRSGRQVKRRK
YNEDLDFKVVDDDGETIAVLGTGRIPALNAATLTWQAEEPPEDEANIIEKILSVRTVKKE
ASPEDTTEESEEFYVKYRNFSYLHCKWATLEELEKDPRIQQKIKRFRTKHAQMKHIFVEP
NEDLFNPDYIEVDRVLEVAITTDTETGEEVTHYLVKWCSLSYEEATWELQEDVDPVKIRE
FEEIKRIPEFKFVERPQPDKWQKLDKSKDYRNGNQLREYQLEGMNWLLFNWYNRKNCILA
DEMGLGKTIQSITFLFEMFSMGLRGPFLIIAPLSTITNWEREFRTWTEINVIVYHGSQIS
RQMIHQYEMYHKDQQGNVVLGGYKFHGVITTFEMIMADCLELKKIHWRCVVIDEAHRLKN
RNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPLQFPSESLFLEEFGDLKTE
EQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNMQKKYYRAILEKNFTFLAKG
ANQHNMPNLINTMMELRKCCNHPYLIKGAEEKILDSFRKTHSPDAWDFQLQAMIQAAGKL
VLIDKLLPKLIAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF
CKVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVY
RLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGAQQMTKIEVEDLLRKGAYGALM
DEEDEGSKFCEEDIDQILQRRTQTITIETEGKGSTFAKASFVSSGNRTDISLDDPNFWQK
WAKITELEIDSKAEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELDSDSEERPCRTRRF
SERNRRYLRAECFRAEKNLLIFGWGRWKDILTHGRFKWQLAEHDMEVLCRALLVYCVRHY
MGDDKIKSFIWDLITPAKDGHKQDLQNHSGLSAPVPRGRKGKKLKNQLSVPEMKHADWLV
NCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGETAAQSLEGIHASKLEVALP
DIDYIEIPAGWWDAEADKSLLLGVHKHGYERYNAMRADSELCFLERVGMPDVTGLSAEQS
GGEVVADLTDSACKSDDVKDDPECNQEEGGVEKVDNKDETISSNDAMDKHDSVGQDTLLV
EMVQETFGQEGMELKGRPLWPAGPALTARLRRLITAYQRFMRRHDFLLPEGLGTMSWQLG
EEIRRCTVAAAEPDPLFLEWQRRWVMMSEQRWTRREQADFYRTVSSFGVVYDPEKKAFDW
SPFRSFARLERKTDESLERYFSSFVSMCRTACRLTPRKDEGPLDHNLFVEPITEERAART
LYRIELLRKVREQVLRHPLLCPRLQLCRPSLYLPVWWECGKHDRDLLIGAARHGLCRTDY
YILNDPQLSFLEAHRNYVQKENHQGYQPSVHHAGMAPSPHHHPCCIYETGLGQCHSPQPP
EYSHQAIPSSSIHFHSHPNVHGHPPEIVGMGPGGSLGMVSGPREGFLVCPPLDESLELAS
LQHEGLASDSLHGKSTKEAFNGFPFNSAQGGQSMLNSYGVQGELTSEQSADMDPIISGKL
RSDVLVGSSEENGLLAPLLELEQELQAPWESTDHTGTADVVGMFNEADPILGAPALDTEF
LDTEEQPGDGGREDGAGEVLDDCLGIPSSRSDPGEPLPSSFMLFKNIDVSEEEPAAEHTN
LSASPLPSYTPPPHLSLSHMTLHPHHHNQGDVEQPEEKLSDSDTVAHVPSPEEREAERDV
SFEFDKEEMSVDSPSLVGLEQGLDTSCIPCEDTLQEEPCYGMGMGSPVESCQVALERPGE
ETLERDMPLGLVEEGLLEGQAEEPLEISPMDSQEEDPVDGPLEDFGKDKTPEGPFTGPLE
QYDVEPEAAFEGPAEAESTLSEHTLPTVDATYTLPPSSSVPRPQPEPPLSPRVAGVSKIK
LEFPLDPESSESKSDILEPDSTVLTPKLEQTEVLLEVKDKIKEERPQTPVSVVDSYVEVA
QFAVPMSMCEMPDSLQDAREPTIAQLLQEKALYSFSEWPKDRVIINRLDSICHAILKGKW
PSSSQQYDSPSSLANTCVPNIVHQRAGFISARVQPSQSLNFHIPAPPVTRLPKYKSRDAG
ECSQGGWKLTSLPLLQERLVAPPYLPELKRGRRAFEYKAEVLSKQCHTGENMPVTVSNRG
GALLLNGWQEAAMDLSKAGDLGIGGDAAATVGHMSHQVHPVARKLPAMSAMQGSVGKDMA
GILQAGLIHPVTGQIVNGNLRCDDAIMRRRRGRRRNVEAVDIGFVKSRGMHVQEKQGRVE
VTSHSAVSSTSSPPERPPGTSTPTLSEVVAIDREAANNGLMEWLRQNPNCSMEVPTFAPS
PGSAILHSFVERPKQRRHRCKDPTKLDVNSLTGEERVPVVHRSTGRRLGGAMAPAIKELS
RWLDANTEYCVAPDWADVVKHSGFLPEGKFTRILTEPVCRDPGPRRRGRRPRSEMPKPLL
SESPMGPLCMNGGLIGSMDLVSLQNLRNVQGIPLTGLMGFPHGFAVSTGEDAKNGLSMLP
MMLHGVHGAPHMFSVQGLMGLPPTCSASTSSTAAVTTTAASSSAASSPSRGPGQASSSTG
AEGSGIQSGTERKREEKQQGAMGSHSIAAITTTTATSSGSHQAFNPFLIPGMSHGLLYPH
MFLPHGGVMALPGMPPADSSSSPKMKKKRTREEGVVVVVVEAGSHSGPPKKHSDGQTGES
TADQAGPEDREQTEDSIQEEGTGHDSHDPPEVNSKKSVEEERGTMEISLMEEEKLPEEES
VSRGAE
NT seq
9201 nt
NT seq
+upstream
nt +downstream
nt
atgcatttttctaaactgtcatggcgtttttgtgtccttggaaataaatgcagggagaaa
gcgcagtgttcggcaactgatgctctgaccggtgagtgttgcccagatgcagtgaaggtg
aagagaaatatgaaaatacaaaagaaggacaaacagatgtccaccacccacttacaaaag
tacactccagctacagcagcctctaatgcaactgcccaaaatgcacaaactccatttccc
aggggtaccctgggctctaaggaccagatcagggaccttggtggtggtcagaccaatcac
tgcatggccaactccaagcaccccaggatgtgcgaggcgagcactagctcggtcagcccc
tgcgccccctcgtcacccctcaacagcgaggaggacgatggagggggcgggcggtgggcg
aagaagaagaagaagaagaaacaaaagaaaaaagacaagtggggcgagcctggcagtgcc
tggcagcacaagggcatggagagagacatgaaaccaaataaaaagagggagcagaaagaa
gggaaggagctgctgctgctgtgcaatttcaaggagcccaggaaggtgaaggcaccaaaa
gaggtgaagagagggagaaaacccaaggtgcaggccctgccccatcctccttcagaatgc
aagagcgccccctctcctcccagacagaggggccgcaaacccagagagcaagtcttccaa
gggccggtcccagcggagaagaagaaaaagggcaagcggaaaagcgaggcagttgtccag
gaggctggggagagagataatgtggccttcctgtccgcgctgcccatcaggggagaggag
agcatcgatcccctcgacaacacgaagcgtcgctcggggcgacaggtgaagcgcaggaag
tacaatgaggacctggacttcaaggtggtggatgacgacggggagactattgccgtgctg
gggacgggccgtatccctgccctcaacgctgccactctcacttggcaggctgaggagccc
cctgaagatgaggcaaacattattgagaaaatcctgtcggttcgaactgtgaagaaagag
gcgtcccctgaggatacaactgaggagtcggaggagttctatgtcaagtacagaaatttc
tcctacctgcattgtaaatgggcgacattggaggagttggagaaggaccctcgcatccag
caaaaaataaagcgcttcaggactaagcatgcccaaatgaagcacatatttgttgagccg
aatgaagacctctttaaccctgactacatagaagtggatagagttttggaggtggccatc
actacagacacagagacaggagaggaggtgacacattacctggtgaagtggtgctccctg
tcctatgaggaggctacatgggagcttcaggaagatgtggacccggtgaagattcgggag
tttgaggagatcaagagaatccctgaattcaaatttgtggaaagacctcagccagacaag
tggcagaagctggacaaatccaaagactatcgaaatgggaaccagctgagagagtaccag
ctggagggaatgaactggctgctcttcaactggtacaacaggaagaactgcatcttggct
gacgagatgggccttgggaagaccatccagtccatcaccttcctctttgagatgttctcc
atgggcctgcggggacccttcctcatcatcgcccccctttctaccatcaccaactgggag
agggagttccgcacctggactgagatcaacgtcattgtctaccacggcagccagatcagc
cgccagatgatccaccagtatgagatgtaccacaaggaccagcagggaaatgtagtgttg
ggcgggtacaagttccacggagtgatcaccacctttgagatgatcatggccgactgcctg
gagctgaagaagatccactggcgctgcgtggtcatcgatgaggcccaccgcctcaagaac
cgcaactgtaaactcctggagggcctcaagctcatgaacctggaacacaaggtcctcctg
acaggcacccccctgcagaactcagtggaggagctctttagtctgctcaacttcctggag
cccctacagttcccctcagagagcctcttcttggaggagtttggagatctgaagactgag
gaacaggtgaagaagcttcaggccatcctgaagcccatgatgctgcggcggctgaaggat
gacgtggagaagaacctggcgcccaaggaggagaccatcatcgaggtggagctcaccaac
atgcagaagaagtactaccgggccatcctggaaaagaacttcaccttcctggccaagggg
gccaaccagcacaacatgcccaacctcatcaacaccatgatggagcttcgcaagtgctgc
aaccacccctacctgatcaaaggtgcggaggagaagatcctggatagcttcaggaaaacg
cacagccctgatgcttgggacttccagctccaggccatgattcaggcagcggggaagctg
gtgcttattgacaagctgctgccgaagctgattgctggcggccacaaggtgctggtcttc
tcccagatggtgcgctgcctggacatcctggaggactacctcatccagaggaggtacacc
tatgagcgcatcgacggcagagtgcggggtaacctgcgccaggcagcgatcgacagattc
tgtaaggtggactcggaccgctttgtgttcctgctgtgtacccgtgctgggggcctgggc
atcaacctgactgctgcagacacctgcatcatcttcgactcggactggaacccccagaat
gacctacaggcccaagctcgctgccaccgtatcggccagagtaaagcagtgaaagtgtac
aggctgatcaccaggaactcctatgagagggagatgtttgataaagccagtctgaagctg
ggtctagacaaggctgtgctgcaggacattaatcgaaagggcagcctcaatggggcgcag
cagatgaccaagattgaggtggaggacctgctgaggaagggggcgtatggcgcactgatg
gatgaggaggacgagggctccaagttttgcgaggaggacatcgaccagatcttgcagcgc
cgcacccaaactatcaccatcgagacagagggcaagggctccaccttcgccaaggccagc
tttgtgtcttctggaaacagaactgacatttccctggacgatcccaacttctggcagaaa
tgggccaaaataaccgagctggagattgactccaaagcagagaaggagagcctggtgatt
gatacacctcgtgtgaggaagcagactcgtcactacaactcgttcgaagacgacgagctg
atggaattctctgagctggacagcgactcagaagagaggccctgtcgcacccgccgcttc
agcgagaggaacagacgctacctccgtgccgaatgcttccgcgccgagaagaacctgctc
atattcggctggggtcgctggaaggacatcctaactcacgggcgcttcaagtggcaactg
gctgagcatgacatggaggtgctttgccgggcactgctggtctactgtgtgcgtcactac
atgggcgatgacaagatcaagagctttatctgggacctcatcacacctgccaaggatggc
cataaacaagacctgcagaaccattctggcctgtccgccccagtgcccaggggacgcaag
ggtaagaagctaaagaaccagctgagcgtgcccgagatgaagcatgcagactggcttgtc
aactgcaacccagaggtagtgctacaggacgacagctacaagaaacacctcaagcagcac
tgcaacaaggtacttctgagggtgaggatgctgtactacctcaaggcggaggtcctggga
gaaactgctgctcagtccctggagggcatccatgccagtaaactggaggtggcactccct
gatattgactacatcgagatcccagcaggctggtgggatgcagaggcggataagtctctc
ctcttaggagtgcacaaacacgggtatgagcgatacaatgccatgcgggccgactcagag
ctatgcttcttggagcgggtgggcatgcctgacgtcacggggctctcagccgagcagagt
ggaggagaggtggtggctgacctcactgacagtgcttgcaaaagtgatgatgtgaaagac
gatcctgaatgcaatcaggaggagggaggagtggaaaaggttgataataaggatgaaacc
atctccagtaatgatgcaatggacaagcatgacagtgttggtcaagacacactcttagtg
gagatggtccaggagacctttggccaggagggcatggagctaaagggtcgccctctgtgg
ccggccggccctgcccttacggccaggctacgtcgcctcatcacggcctaccagcgcttc
atgcggcgccacgacttcctgctacctgaagggctggggacgatgtcctggcagctgggg
gaggagattaggcgttgcacggtggccgccgccgaacctgaccctctcttcctggagtgg
cagagaaggtgggtgatgatgtcagagcaaaggtggacacggcgtgagcaagcagatttc
taccgcaccgtgtcgtcgttcggtgtggtgtacgacccggagaagaaagcattcgactgg
agtcctttccgctcctttgcccggttggagaggaagaccgacgagagcctggagagatac
ttcagtagctttgtgtccatgtgccgcaccgcctgcagattgacccccaggaaggacgaa
gggcctctggaccacaacctgtttgtggagcccatcacagaggagcgagcagcacgtacc
ctctaccgcatcgagctgctgcgcaaggtcagggagcaggtgctgcgccacccactgctg
tgcccgcggctgcagctgtgtcggcccagcctctacctgcctgtgtggtgggagtgtggc
aagcacgaccgcgacctcctgattggagcggcccgccacggcctctgccgcactgactac
tacatccttaacgacccgcagctatcttttctggaggcccaccgcaactacgtccagaag
gagaatcaccagggctaccaacccagtgtgcaccacgcaggcatggccccctcaccgcac
caccacccctgctgcatctatgagacaggcctcggccaatgccactctccccaaccgccg
gagtacagtcaccaagccatcccctcctcttcgatccacttccattctcacccgaacgtc
cacggtcacccgccagaaatagtgggcatgggccccggtggcagcctaggtatggtgtct
gggccaagggagggcttcctggtttgcccccctctggatgagtcattggaactggcatca
ctgcagcatgagggcctggcctcagattccctccatggcaagtctaccaaggaggccttc
aacgggttccccttcaactcagctcagggcggccagagcatgctcaactcgtatggtgtg
cagggggagctgaccagcgagcagtcggccgacatggacccgatcatctcaggcaagctg
cgcagcgacgtgctggtgggctcctcggaagagaatggtcttttggcccccttgctggag
ctggaacaggagctgcaggcgccctgggagagcactgaccacacaggcacagcagatgtc
gtgggcatgttcaacgaggccgaccccatcctgggggcaccagcccttgatacagagttc
ctggacacagaggagcagccaggagatgggggaagggaggacggagcaggggaagtgctt
gacgactgcctaggtataccctcatcccggagcgacccaggggagccgctgccctccagt
ttcatgctgttcaagaacattgacgtgagcgaagaagagcctgctgcagagcacacaaac
ctctctgccagcccccttccttcctacaccccccctccgcacctgtcgctgtcccatatg
accttgcacccccaccaccacaaccagggtgatgtcgagcagccagaggagaagttgagt
gactctgacactgtcgcccacgtgcccagccccgaagagagggaggcagagagggatgtg
tcctttgagtttgacaaagaggagatgtctgtggacagtcctagtctggtggggctggag
cagggcctggacacctcatgtataccatgcgaggacactctccaagaggagccctgctat
gggatgggaatgggctctccagtggagtcatgtcaggtggctctagagaggccaggagaa
gagactttagaaagggacatgcccttagggctagtggaggaggggcttctagagggacag
gctgaagaacccttggagatatcgcccatggattcccaggaggaggacccagtggatggt
cctctggaagacttcggtaaagacaaaacaccagaaggaccattcacagggccattggag
cagtacgacgtagaaccagaagcggccttcgaggggcctgccgaagcagagagcacttta
agcgaacacacactccccactgttgacgctacatatactctgcccccatcctcctcagtc
cccaggccccagcctgagccgccactgtccccacgtgtggctggagtgtcaaagatcaaa
cttgagttccctctggacccagagagctctgagagcaagtcagacatactggagcctgac
agcactgtcctcacgcccaaactggagcagacagaggtgctgctggaagtaaaggacaag
atcaaggaggagaggccccaaactccagtctctgtagtggacagctatgtggaggtggca
cagtttgccgtccccatgtccatgtgtgagatgcctgacagtctgcaggacgcgcgggag
cccaccatcgcccagctgctgcaggaaaaagccctctactccttctccgagtggccaaag
gatcgggtgatcatcaaccgcctggacagcatctgtcacgccatcttgaaggggaagtgg
ccctcctccagccagcagtatgactcccctagctctctggcaaacacctgtgtgcctaac
attgtgcaccagagggctggcttcatttcagccagggtacagccttcccagagccttaac
ttccacatcccagcccctcctgtaacccgccttcccaagtacaagtcaagagatgccggg
gaatgcagccagggaggctggaagttgacatccttgcctctcttgcaggagaggctggtg
gcgccgccctatttgcctgaactaaagcggggtaggcgtgcatttgaatacaaggcagag
gtgctcagtaagcagtgccacacaggggagaatatgcctgtaactgtgtcgaacagaggt
ggggcgctgctgctcaacggctggcaggaggcggccatggacctctccaaggccggggat
ctgggcattgggggcgacgcggcagccactgtaggccacatgagtcaccaggtccacccc
gttgcccgaaaactgcctgccatgagcgccatgcagggttcagtggggaaggacatggcc
gggatcctgcaggcaggtctcatccaccccgtcaccggccaaattgtcaatggcaacctg
aggtgtgacgatgcaatcatgcgccggaggagaggcagacggagaaacgtggaggcggtt
gacatcgggtttgtcaagagcagaggaatgcatgtgcaggaaaaacagggcagggtagaa
gtcaccagccattctgcagtgtcgtccacctcctccccacctgagcgccccccgggaacc
tccacccccaccctgtcagaggtggtggccatcgacagagaggctgccaacaatggcttg
atggaatggctgcgacagaatcccaactgtagcatggaggtgcccactttcgcaccgtct
cctggctcagcgattctgcacagctttgtggagcggcccaagcagaggcggcatcgctgt
aaagaccccaccaagttggatgtcaactccctaacaggggaggagagggtgccagtggtc
cacaggagcactggccgcaggcttgggggtgctatggctccagcaatcaaggagctttca
cgatggctggatgcaaatactgagtactgcgtggcacctgactgggcagatgtagtgaaa
cactctggttttcttcctgagggcaagttcacccgcatcctcactgagcccgtgtgccgc
gacccggggccccgccgccggggccgtcgtccccgtagcgagatgcccaagcccctcctc
tccgagtctcccatgggcccgctctgtatgaacggcggcctgatcggcagcatggacctg
gtcagcctccagaacctccgcaatgtccagggcatcccactcacaggcttgatgggattc
ccccatggctttgctgtgtccaccggtgaagatgcaaagaatggtctgagcatgctgcct
atgatgctccacggcgtacacggcgccccccacatgttcagtgttcaggggctgatgggt
ttgccgcccacctgctccgcttccacctcctccacggctgcagttaccaccactgcggcc
tcctcctcagcggccagtagcccctctcgaggccccggccaggcatcttcgagcacaggg
gccgagggctccggcattcagtctggcacagagagaaagagggaggaaaagcagcaaggc
gcgatgggcagccacagcattgcggccatcaccaccaccacagcgaccagcagtggcagc
caccaggccttcaaccctttcctcattccgggaatgtcccatggtctgctgtaccctcac
atgttcctcccgcacgggggcgtcatggcgctgccaggcatgccgcctgcagactcctcc
agcagcccaaagatgaagaagaaaagaacaagggaggaaggggtggtggtggtggtggtg
gaggcaggcagccacagtgggcctccgaaaaaacacagtgatggccagactggggagagc
acggctgaccaggctgggccggaggacagggagcagacggaggacagcattcaggaggag
ggcacgggacacgactcccatgatcctccagaggtaaactccaagaagagcgttgaagag
gagagaggaacgatggagattagcttgatggaggaggaaaaactgcctgaggaggagagc
gtgtcaaggggggcagagtag
DBGET
integrated database retrieval system
