Oncorhynchus kisutch (coho salmon): 109890925
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Entry
109890925 CDS
T09179
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
109890925
Enzymes [BR:
oki01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109890925
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
109890925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
Prok-RING_4
PDZ_Tricorn
zf-rbx1
zf-TRAF
U-box
RING_XB3-XBAT31
LemA
zf-RING_6
TRAF2_zf
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
109890925
NCBI-ProteinID:
XP_020338668
Ensembl:
ENSOKIG00005049640
UniProt:
A0A8C7L9A3
LinkDB
All DBs
Position
LG5:32823066..32944841
Genome browser
AA seq
1054 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLIMKLDIKCDNHARGCEKVVKLQHLAEHAEMCDYSPAKCRNKGCNEVL
NLKDMDAHMRESCDCRPVGICENGCGLMLTHKEQKLDTHCCLKALKAHNSALHVKVVSLD
KEFKKQSLKSSKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLTKTLAPPCKGG
ETKNITAILHREGGSLGFNIVGGRPCADDHDGPSNEGIFVSKIVENGPADKEGGLQIHDR
IMEVNGKDLSKATHDQAVEAFRTAKEPIMVQVLRRAPRPKPSSPASDTQVVDISTQTDIT
FQHIMALTKLPAAAPTVAVLEQYLMPEEHSPGHEYFDPNDFLEGMQQEMEREELEYEEVD
LYRANIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNR
EDAVALLTSEENQNVCLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKREEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDQTAASNTLG
SCSRRKLAYSQDTLGSIDLPFSGESFISADYDHADFLGIPADECERFRELLELKCQVRSA
GGPQELYCQSAGARGAEEGVDKELELLNEELRSIELECLNIVRAHKMQQLREQYRESWML
HNSGFHNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRR
GAENQGESGASSSAGPNSRILKPLLSPVQEAGGPSRIRPSSSKESECGLQAEGKERKLGE
STHKLAQPRSLYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSLVSRGDPVNPED
MLDPKMEWKVKIRSDGTRYITKRPVRDKLLKERALRIHEERSGMTTDDDAISELKMGRYW
SKGERKQHAVRAKEQRQRREFMKQSRADCLKEQASLDDDKKEPNIIELSHKKMMKKRNKK
IFDNWMTIQELLTHGAKSPDGTRVYNSLLSVTTV
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcggtttaaaggggctgtggacccagattttaaatgtaatttg
tgtaataaagttctagaagacccgctcactactccgtgtggtcacgtcttctgcgctggc
tgtgtgctgccttgggttgtccagcaaagcagctgccccgtcaaatgtcaaaggatctcc
acgaaagagctgaaccacgttctccctctgaaaaacctgattatgaagctggacataaag
tgtgacaatcatgccagaggctgtgaaaaagtggtaaagctgcaacatctggcagagcac
gccgagatgtgcgattactcgccggcaaaatgcaggaataaaggatgcaacgaggtgctc
aatctgaaggacatggatgcacatatgcgcgaatcgtgtgattgcagaccggtcgggata
tgcgaaaatggatgtggcttgatgctcacccacaaagagcaaaaactagacacccattgc
tgtttgaaagccctgaaagcacacaacagtgcattgcacgtgaaggtggtcagcttggac
aaagagttcaagaagcaatctttgaaatcgagcaaaagagagaaatctcttcttgctcaa
ctctctgctgtgcataatgagctacaaatgacagcactgaagtatcagaagaaattcact
gaatacagtgcaaggatcgactcgctgactaagacccttgcccccccgtgcaagggtggg
gagaccaaaaacatcacagccatccttcatcgggagggcggttctctgggcttcaacatc
gtgggaggacgaccatgtgcggacgaccatgatggcccttcaaatgaagggatctttgta
tctaagattgttgagaacggaccagcagacaaggagggaggccttcagatccacgacaga
ataatggaggtgaatgggaaggacctttccaaggccacccatgaccaggcagtggaggcc
ttccgcacagccaaggagcccatcatggtccaggtacttcgccgggccccccgccccaaa
ccctccagccctgcctcagacacccaggtggtggacatcagcacccagacagacatcacc
ttccaacacatcatggccctcaccaagctgcctgccgccgcccccaccgtggctgtgttg
gagcaatacctcatgcccgaggagcattcccccgggcacgagtactttgaccccaatgat
ttcctggagggtatgcagcaggagatggagcgagaggagctggaatatgaggaagtggat
ttatacagagccaacatccaggacaagcttgggttgaccgtctgctacaggactgatgat
gaggacgagactgggatctacgtcagtgagattgacccaaacagcatcgctgcaaaggat
ggcaggatcagagagggagatagaattatccagatcaacgggattgagatccagaaccgg
gaggatgctgtggctttgttgaccagtgaggagaatcagaatgtgtgtctactggtggcc
agaccagagatccagctggatgagggctggatggatgatgacaggaatgacttcctggat
gacctccacatggacatgctggagcagcagcaccaccaggccatgcaattcaccgccagc
atgctgcagcagaagaagcgtgaggaggatggtggaacgactgacacagccaccctgttg
tccaatcaccacgagaaagacagcggggtgggccgcaccgacgagagcacacgcaacgac
gagagctctgagcaggagaacctgggggacgaccagactgcggcctccaacacgctgggc
agctgcagccgcaggaagctggcctacagccaggacaccctgggaagcattgacctgccc
ttcagtggtgagtccttcatctctgcagactacgaccacgctgacttcctgggtatcccc
gccgacgagtgtgagcgcttccgagagctcctggagctgaagtgccaggtgaggagcgcg
gggggcccccaggagctgtattgccagagtgcaggggctagaggtgccgaagagggggtg
gacaaggagctggagctgttgaacgaggagctgcgcagcattgagctggagtgcctcaac
atcgtccgggcccacaagatgcagcagctgagggagcagtaccgcgagtcctggatgctg
cacaacagcggcttccacaactacaacaccagcatcgacgcgcgccgccatgagctctct
gacatcacagagctgcccgagaagtcagacaaggacagctccagcgcctacaacaccggt
gagagctgccgcagcacccccctcaccctagagctgtccccagacaactcccttcgcagg
ggggcagagaaccagggcgagtctggggcctccagcagcgcagggcccaacagcaggatc
ctcaagcctctgctgtctcctgtccaggaggctggtggccccagcagaatcaggccctcc
tcctctaaggagtctgagtgtggcctgcaggcggaggggaaggagcgtaagctgggagag
tctacacacaagctggcccagccccgctccctgtacaaacacgcccacatcccggcccac
gcccagcactaccaaagctacatgcagctgatccagcagaagtctgccgtggagtacgcc
cagagccagatgagcctggtcagtctggtcagccgcggtgaccccgtgaaccccgaagac
atgctggatcccaagatggagtggaaggtgaagatccgcagcgacggcacgcgctacatc
accaagaggcccgtcagggacaagctgctgaaggagcgcgccctgcgtatccacgaggaa
cgcagcggcatgaccacagacgacgacgccatcagtgagctgaagatggggcggtactgg
agcaagggggagaggaagcagcacgcggtgcgcgccaaggagcagaggcagcggcgcgag
ttcatgaagcagagccgcgccgactgcctgaaggaacaggccagcctggacgatgacaag
aaggagcccaacatcattgaactgagccacaaaaagatgatgaaaaagaggaacaagaaa
atctttgacaattggatgactatccaggaacttttgacccacggtgctaagtcgcctgac
ggcacgcgagtgtacaactccctcctgtccgtcaccacagtgtag
DBGET
integrated database retrieval system
