Oncorhynchus kisutch (coho salmon): 109891128
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Entry
109891128 CDS
T09179
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109891128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109891128
03036 Chromosome and associated proteins [BR:
oki03036
]
109891128
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109891128
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
109891128
PBAF complex
109891128
GBAF(ncBAF) complex
109891128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
109891128
NCBI-ProteinID:
XP_020339042
Ensembl:
ENSOKIG00005027952
LinkDB
All DBs
Position
LG5:46310389..46327303
Genome browser
AA seq
1063 aa
AA seq
DB search
MAVRKKDGGPNVKYFETSDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTRLPMKSFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEAKLLGKLKDIIKRHQGSVTEDKTCSSHVVVP
IPASLEEEEWVRPVMKRDKQVLLHWGYSPDSYDTWISASEVEAAVEDPPSPEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPKRKRISAKTLTDEVTTPGDERRDKKPGSAKKRKRSP
SPSPTPTSQESKKKNTKKGPTTPYTKSKRGQREEEPEDLTKDLDEPSPVPAVEEVTLPKT
ANTKKDSELTPVKGGTMTDLDEQEDESMETAEKEEEGSPSVKGEPVKGSDLHEDNVTEQT
HHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYL
TSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSL
VPLQPKASQTPAAQQILSFPDKVKEKQPADLQNFGLRTDMYSKKTGPPKSKTAANAMRDW
TEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDMSSSLGPLAY
QPVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEE
AARASGRQDPLYGLEGSGIAGTSLEEGDKPEESSEESKSDSQSSEEKRETKENKDGAMEE
DEKQGENGKKEEERGREGEGERDRESEKTETEMGEREKEKEGKEALEEGQREGESEGERK
AKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHF
EELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHSQTGGPH
PAPAPTGPPPQGPSATQSQPAPSIPAPQPAPSPAPSASSVPMTGPSSAQAQPTEPQPTPS
GPHSSPPRPPGHSSTNTTPTPTLHESSAPGDTLHSSTAAPTPQ
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaacgtaaaatatttcgaaacgtctgatacc
gtctcgcaattcgacaatgtccgcgtttggttgggcaagaattataaaaagtacatccag
gcggagccccccaccaacaagtctctgtccagcctagtggtccagctactgcagtttcag
gaggaggtgttcggacgacatgtcagcaacccacctctcaccaggctgccgatgaagagt
ttcctggactttaagtctggtggggctctctgccacattctggcagcagcctacaagttc
aagagtgatcagggctggcgcaggtttgactttcagaatccttctcggatggaccgcaat
gtggagatgttcatgactatcgagaaatccctggtacagaacaactgtctgagtcgacca
gtgatctacctgagttctgacattgaggccaagctgctggggaaactgaaggacataatc
aagaggcaccagggctcagtaactgaagacaagacatgcagctcccatgtggtggttccc
atccctgccagtcttgaggaggaagagtgggtgcgtccggtgatgaagagagacaagcag
gtgctgctccactggggatactctcctgacagctatgacacctggatctcagccagtgag
gtggaggcagctgtggaagatccgcccagcccagagaaacccaggaaggtccatgccaag
tggatcctggacctggaccagtttaatgagtggatgaatgaggaggactatgaggtcgga
gaggggggccccaagaggaagaggatctcagccaagaccctgacggacgaggtgaccacc
ccaggggacgagcgccgggacaagaagcccggcagcgccaagaagaggaagcgctcaccc
tccccctcgcccactccaacatcccaggagagcaagaagaagaacaccaagaaagggccc
accaccccgtacactaagtctaagcgaggccagagagaggaggagccagaggatctgact
aaagatctggatgaaccatcacctgtacctgctgtagaggaggtcaccctacctaagaca
gccaacactaagaaagactctgagttgacaccagtgaaaggaggtaccatgacagacctg
gatgagcaagaggatgaatccatggaaactgcagaaaaggaggaggagggctctccgagt
gtgaaaggagagccggtgaaagggtcggacctccatgaggacaacgtgactgagcagacc
caccacatcatcattcccagctacgctgcatggtttgactacaacagtgtccatgctatt
gagcgcagagccctcccagagtttttcaatggcaagaacaaatccaaaacccctgagatt
tacctggcctacaggaacttcatgattgacacgtacaggctgaacccgcaggagtacctc
acctccactgcctgtcgtaggaacctggccggagacgtgtgcgccatcatgagggtgcat
gcattcctggagcagtggggtctgatcaactaccaggtggactcagagagccggcccacc
cccatgggccccccgcccacctcccacttccacgtcctggctgacaccccttccagcctg
gtgcccctgcagcccaaggcatcccagactccggcggcccagcagattctgtcattcccc
gataaggtgaaggagaagcagccagccgacctgcagaactttggcctgaggacagacatg
tacagcaagaagactgggcctcctaagagtaagactgctgccaatgccatgcgagactgg
accgaacaggagacactactgctgctagagggtctggagatgtacaaggatgactggaac
aaggtgtcagagcacgtgggctcacgtacccaggacgagtgtatcctacacttcctgcgt
ctgcccattgaggacccatacctggaggacatgtcctcgtccctgggccccctggcctac
cagcccgtccccttcagccaggcaggcaaccccgtcatgagcacagtggccttcctggcc
tccgtggtggacccccgcgtggcctccgcagccgccaagtctgccctggaggagttttcc
cgtatgaaggaggaggtcccagcagcactggtggaggcccatgtgaggagggtggaggag
gcggcgcgggccagtggcagacaggaccccctctacggcctggagggcagcggcatcgca
ggcaccagcctggaggaaggagacaaacctgaagagagcagtgaggagagtaagagtgac
agccaatccagtgaggagaagagggagaccaaggagaataaagatggagccatggaagag
gatgagaagcaaggagaaaatgggaagaaggaggaggagagagggagagagggagaagga
gagagagaccgagagtctgagaagacagagacagagatgggtgagagagagaaggagaag
gaagggaaggaggccttggaggagggccagagagaaggagagagcgagggcgaaaggaag
gcgaaggtggaacgggatgtgggagaggggaacctggctaccgctgctgcctctgccctg
gctgctgctgccgtcaaagccaagcacctggctgcggtggaggagaggaagatcaagtct
ctggtggctctgctggtggagacccagatgaagaagctggagatcaaactgagacacttt
gaagagctggagaccatcatggaccgagagagggaggctttggagtaccagaggcagcag
ctgctggcagaccgtcagtcgttccacatggagcagttgaagtatgcagagatgagggcg
cgtcagcagcacttccaacagatccagcaccagcagcatagccagactggaggcccacac
cccgccccggctcccacgggccccccaccccagggcccctcagccacccagtcccagccg
gcccccagtatccctgcaccacaaccagctcccagcccagcaccctctgcctcctccgtc
cccatgactggcccctcctctgcccaggcccagcccactgagccccagccgacccccagt
ggtcctcactcctcacctccccgcccaccaggccactccagcaccaacaccacccccacc
ccaacactccacgagtccagcgcccctggggatacactccattcctcaaccgctgctccc
actccacagtga
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integrated database retrieval system
