Oncorhynchus kisutch (coho salmon): 109891658
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Entry
109891658 CDS
T09179
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109891658
04518 Integrin signaling
109891658
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109891658
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oki00536
]
109891658
Glycosaminoglycan binding proteins [BR:
oki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109891658
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
109891658
NCBI-ProteinID:
XP_031681571
Ensembl:
ENSOKIG00005001719
LinkDB
All DBs
Position
LG5:complement(67674898..67753959)
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVVLLAVVKCQEEDQDLGSCMQDGQSYSDKDVWKPEPCRICVCD
TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPPSGAPGAKGQKGEPGDITDVVG
PRGPGGPMGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPSGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG
PLGPRGPPGPSGKPGDDGEAGKPGKGGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG
LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIGG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPAG
PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG
VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPMGARG
QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
ASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFAG
PPGSDGQPGVKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPSGATG
FPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPPGRQGDAGLRGAAGSPGEKG
DAGEDGPSGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGSGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGSPGANGSPG
PVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG
LQGLPGPPGQAGDQGASGPAGPSGSRGPPGPIGPHGKDGSNGMPGPIGPPGPRGRSGETG
PSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNM
ETGESCVYPKPASIPKKNWWSSKSKAAKHVWFGETMNGGFHFSYGDDSLAANTASIQMTF
LRLLSTEASQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYTVMQDG
CTKHTGAWGKTVIDYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcgaggactgtactgctacttgtagcaacccaagtcgttcta
ttagcagttgtcaaatgtcaggaagaagaccaggacctaggcagctgtatgcaggacgga
cagagctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac
acgggaactgtcctgtgtgacgaaataatctgcgaggagattaaagactgccccaaacct
gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagcccccccaagt
ggggccccgggagctaagggtcagaagggggaaccaggagatatcacagatgtcgtagga
ccaagaggacctggaggccctatgggccccccaggagagcagggaccacgcggagacaga
ggagacaaaggcgataagggcagtcccggtccccgtggcagagatggcgagcctggtacc
cctggaaaccccggcccccccggaccctcaggacctaacggacctcccggccttggagga
aactttgctgctcagatggctggaggatttgacgagaaggctggcggagcacagatgggc
gtgatgcaaggaccaatgggccctatgggtcctcgagggccacctggcccctctggagct
cctggcccacaaggtttccaaggcaaccccggagaggctggagagcccggatcagctggc
ccgttgggtccccgtggtccacctggaccctctggtaaacctggagatgacggtgaggct
ggcaaacctggcaaaggtggtgatcgtggaccttctggtcctcagggagcccgtggattc
ccaggaactcccggtctgcctggaatcaaagggcatagaggttatccaggtcttgatgga
ctcaagggagagggtggagctgctggttctaagggggagtctggtgcacccggtgagaat
ggcgctcccggacccatgggaccacgtggtctgcctggtgagagaggtcgccccggtccc
tctggagctgctggtgctcgtggtaatgacggtctgcccggtcctgctggtcctcctggc
ccagttggtccatctggtgctccaggcttccccggttctccaggttctaagggagaagct
ggccccaccggtgctcgtggacctgagggcgcccagggaccacgtggagagtcaggaacc
cccggatctcccggacccgccggcgcttctggtaaccctggtactgatggtattggtggg
gctaaaggatcagctggtgctcctggtatcgctggtgcgcctggcttcccgggaccccgt
ggccctccaggaccccagggagccactgggcctctcggaccaaagggaacatctggtgac
cctggtatcccaggtttcaagggtgaggctggacccaaaggagagattggacccgcgggt
ccccaaggagcccttggccctgcaggagaggaggggaagaggggacctagaggagagccc
ggcgctgctggacctctcggacctcccggagagagaggcgcccccggtaaccgtggtttc
ccaggtcaggatggtctggctggtcccaagggagcccctggcgagcgtggagtcggcggc
gtgtctggtcctaagggagccggcggtgaccctggtcgccctggcgagcccggtcttcct
ggtgcaagaggtcttactggtcgtcccggtgatgcaggtcctcaaggaaaagttggacct
ggtggtgctgctggtgaggatggtcgccctggtccccctggccctatgggagcccgcggt
cagcctggcgtgatgggattccccggacccaagggagccaacggcgaacctggcaagggc
ggagagaaaggattgctcggtgcgccaggtctgagaggtcttcctggtaaggatggtgag
accggagctgctggaccccctggccctgctggccctgctggagagagaggagagcaagga
caacctggaccttctggcttccagggtcttcccggacctcccggcccccctggtgagggt
ggcaagcccggtgacatgggagttccaggagagggtggagctgctggtgccactggacca
agaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcaggga
ccccgtggtcttcctggaactcctggaactgacggacctaagggcgcgatcggaccaggt
ggtgcatcgggtgcccagggaccccccggtctgcaaggtatgcccggagagagaggagcc
tcaggcatccccggacctaagggagacagaggtgacaacggagagaagggacctgagggt
gcttctggcaaagacggttcaagaggtttgactggtccaattggtcctcctggcccagct
ggtcccaatggagagaagggtgaatctggtccctctggaccttccggtgctgctggtgcc
cgaggtgctcctggtgacaggggtgagactggacctcctgggcctgctggcttcgctggg
cctcctggatctgatggtcagcccggagtcaagggagagcagggagagggtggacagaag
ggagatgctggtgcccctggaccacagggaccctccggagctcctggaccttccggacct
actggcgtttctggacctaaaggtgctcgcggtgctcagggaccctctggtgccactggt
ttccctggagctgccggcagagtcgggccccctggtcccaatggtaaccctggtgctgct
gggccctctggtcctgctggtaaagatggccctaaaggtgtgcgtggagacggtggaccc
ccaggcagacagggagatgctgggctgcgtggagccgctggctcccctggagagaaggga
gatgctggagaggatggtccctctggtcccgatggtccttcaggcccttcaggtctggct
ggacagcgtggtattgttggtcttccaggacaacgtggagagagaggtttccctggcctg
ccaggaccctctggtgagcctggtaaacaaggatctcctggtggaagcggagaccgtggg
ccccctggccctgtggggccccctggactgactggacccgcaggagagcccggtagagag
ggcaacgctggttctgatggaccccctggtagagatggagccactggaatcaagggtgac
cgtggtaacaccggtcctgctggtgctcctggctccccaggagcaaatggttcccccggc
cctgtcggccccaccggcaagcagggagacaggggagaggctggagctcaaggaccagct
ggacctgccgggcctgctggagccagaggaatggctggaccccaaggaccccgtggagac
aagggtgaggctggagagggtggtgagagaggacagaaaggacacagaggattcactggt
ctgcagggtctgcctggacctcccggtcaagctggagaccagggtgcatctggacctgcc
ggaccaagtggatcaagaggacctcccggacctattggtccacatggaaaggatggttcc
aacggtatgcccggccccatcggaccccccggaccccgtggtcgctctggagagactggt
ccctctggtccccctggaaactctggtccccctggtcctcctggtcctcccggccctggt
atcgacatgtctgccttcgctggcctgtctcagcctgagaaatcccccgatcccctgaga
tacatgagggccgaccaggcctctggaaacctgaggacgcacgacgccgaggtggacgcc
acgctcaagtctctcaacaaccagattgagaacatccgctcccccgagggctccaagaag
aaccctgcacgtacttgcagagacctgaagctgtgccacccagactggaagagcggagag
tactggatcgaccctaaccagggctgcaccatagacgctatcaaggtctactgtaacatg
gagaccggagagtcctgcgtctaccccaagcccgccagcatcccaaagaagaactggtgg
tccagcaagagcaaggctgccaaacacgtctggttcggagagaccatgaacggaggattc
cacttcagctatggcgatgacagcctggctgccaacacggccagcatccagatgaccttc
ctgcggctgctgtccaccgaggctagccagaacctcacctaccactgcaagaacagtgtg
gcttacatggatggagccacgggcaacctgaagaaggccgtgctcctccagggatccaac
gatgtggagatcagggccgagggaaacagccgcttcacctacaccgttatgcaggacggc
tgcacgaaacacacaggagcctggggcaagacagtgattgactacagatctcagaagacc
agccggctgcccatcgtggacattgctcccatggatattggaggagcggaccaagagttt
ggagtcgacgtcggtgcagtctgcttcttgtaa
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