Oncorhynchus kisutch (coho salmon): 109892029
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Entry
109892029 CDS
T09179
Name
(RefSeq) general transcription factor IIF subunit 1 isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109892029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109892029
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
109892029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
109892029
NCBI-ProteinID:
XP_031683927
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All DBs
Position
LG6:complement(85180768..85193848)
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AA seq
539 aa
AA seq
DB search
MASLGGSSSSSTEYIVRVPKNTSKKYSIMAFNSGDKVNCSSWTQARMERDMSNRRMYGVE
ETEEGAAGSEFGKKQREESRRKKFGIVTREFKVEDQPWILKVNGKAGKRFKGTKKGGITE
NASYYIFTQCPDGAFEAFPVNGWYNFVPQAKHRTLTAEEAEEEWGRRNKVVNHFSIMLQR
RLREQERGPDDDDEEGEKGGKKKKKKGGRGGDLRIHDLEDDLELSSDESDSSGGEDGDSK
PKKKEGDVKGKGKKKKKKRGSDSEANEDSDDGDFEGLEVDYMSDESSSEEEVGEEKAKSN
KEAVPKGIDEASESEEESEEEKQNEEEGKEEEEEEEGKKTPVQTKKKRDSSGESDTSEDS
DIDGEAASALFMVKKRTPPKRGGGRGSGGSSRTGSRPGTPSIDSASTSNTLRAAASKLEQ
GKRQVVGGSSESPAAKRLKMESSSTAVTTQSPAPSGKSTPQPPSGKSTPSSSDVQLTEEA
VRRYLIRKPMTTKDLLKKFQTKRTGLSSEQTVNVLAQILKRLNPERKNVNDKMHFYLTE
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcattgggtggcagcagttcctcttctacagagtacatagtccgggtccccaag
aacaccagtaagaagtacagcatcatggcctttaactctggggacaaagtaaactgctcc
tcctggacccaggctcgtatggagcgggacatgagtaacaggaggatgtatggtgtggag
gagactgaggagggggcggcaggcagtgagtttgggaagaagcagagggaggagtcacgc
aggaagaagtttggaatcgtcaccagggagttcaaggtggaggaccaaccctggatcctc
aaggtcaacggcaaggcagggaagaggttcaagggtacgaagaaagggggcataacggag
aatgcttcctactacatctttacccagtgtcccgacggggcctttgaggccttccccgtc
aacggttggtacaacttcgtgccccaggccaaacaccgcacgctgaccgccgaggaggca
gaggaggagtggggcaggaggaacaaggtggtgaaccacttcagcatcatgctccagagg
cgcctgcgggagcaggagagagggccggacgatgacgacgaggaaggcgagaaggggggg
aagaagaaaaagaagaagggaggaagaggaggggacctgcgcatccatgacctggaggat
gacctggagctgagcagtgatgagagcgacagcagcggaggagaagatggagacagcaag
cccaagaagaaagagggggatgtgaaggggaaggggaagaagaagaagaagaagaggggc
agtgacagcgaggctaatgaggacagtgacgatggagattttgagggcctggaagtcgac
tacatgtcagatgagagcagttcagaggaagaggtcggcgaagagaaggccaagtccaat
aaagaggccgttcccaaaggaatcgacgaggcatcggagagtgaggaagagagcgaggag
gagaaacagaacgaggaagaggggaaagaggaagaggaggaagaggaagggaagaagacc
ccagtccagacgaagaagaagagagacagcagcggtgagtcggacacttcggaggacagc
gacatcgatggagaggcagcctccgctctcttcatggtgaagaagcgtactcctcctaag
cgcggtggtgggcgtggctctggaggcagctccaggactggcagtcgccctggaacaccg
tccatagactccgcctccacctccaacacactccgagccgccgctagcaaactggagcaa
ggtaagagacaggtggtgggtggtagctctgagtctccagctgccaagaggctgaagatg
gagtccagcagtacggctgtcaccacccagagtcctgccccctcagggaagagcacgcca
cagcccccctcaggcaaatcaacccccagttccagtgacgttcagctgacggaggaggcg
gtgcgtcgctacctgatccggaagcccatgaccaccaaggacctgctgaagaagttccag
accaagaggactggcctgagcagcgagcagacggtcaacgtcctggcccagatcctcaaa
cgcctcaaccccgagaggaagaacgtcaacgacaagatgcacttctacctcacagagtaa
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