Oncorhynchus kisutch (coho salmon): 109892178
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Entry
109892178 CDS
T09179
Symbol
sox30
Name
(RefSeq) transcription factor SOX-30
KO
K09271
transcription factor SOX15/30
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109892178 (sox30)
Transcription factors [BR:
oki03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109892178 (sox30)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
109892178
NCBI-ProteinID:
XP_020340209
Ensembl:
ENSOKIG00005001865
UniProt:
A0A8C7CH78
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Position
LG6:complement(54818868..54834803)
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AA seq
639 aa
AA seq
DB search
MFATMDRHPKRRAQMTFKKSEPSQNEDDSGPPASKKNVSESEEPASSTERHRGDGEQKRP
VGRPKGSGRSGNSVSGGVQVRPKVIFKADNKWGGDGELMPTSSSHLKGAIQGRTVTFEKE
GASSLASKQSKATFDYPTTSQVLVIKEEIITTAPGQAKVKVDQEPATTHHQGCPPVAPTL
DFSKPIHVVHENGMTFTVLDGKAITLSKVPYPPLVHVNVPPPPVKVKTRGMNLTMPPSEA
ENLEVPQSIDRNGYIKRPMNAFMVWARIHRPALSKANPTANNADISVQLGIEWSKLTEEE
KRPYYVEARKLKDKHRQEFPGWIYQPRPGKRKCYPSVMSFAPEPSCCSAGTSGPAAESYP
MTMMTMANTNTSSCVPYTQATGSNDHGLQVAITAAPNASQTTSPVSIFFQTTACPHPHPT
ATTSGGKPAERKHEASHSASNPEEAPKPRKISRQQAYYNSANEMPSTSMASSSRGLQMPL
PNMAHPHMYPPSPIPHPVGLFPTPRFPFAPPYFMPGPNFYPPGSYPYLHSPYSYPVLQPQ
DFSNPMATPMATPGYPYDDNYDQHESTFSLLNRDYPFRQSGEGGQRCQGQAPTASELLGS
VPLLDVRALENVFTNSASVQEVQVPNEEDEEEVRVMRIL
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccacaatggacaggcatcccaagcgaagagcgcaaatgacattcaagaaaagt
gaaccaagtcaaaacgaagatgacagtgggccaccagctagtaagaaaaatgtaagtgaa
agcgaggaacctgcatcttcaacagagaggcatcgaggtgatggagaacagaaaagacca
gtgggtaggcctaaaggcagtggacgttctggaaatagtgttagtggaggtgttcaggtt
aggcctaaagttatttttaaagctgataataaatggggtggtgatggagagctaatgccc
acaagttcatcacacctcaagggagccattcaaggtcgaacagttacatttgaaaaggag
ggcgcatcatcattagccagtaaacagagtaaagctacatttgattatcccacgacatct
caagtgctggtcatcaaggaggagatcatcacaactgctccaggtcaggccaaggtcaaa
gttgaccaagaacctgcaacaacgcatcatcaaggatgtccacctgtggctcccacttta
gacttctccaaaccgatccatgttgtccacgaaaatgggatgaccttcacagtattggat
ggtaaagccataacgctcagcaaagttccatacccaccacttgttcatgtgaatgttccg
ccacccccagtaaaggtgaagactagagggatgaatctcaccatgccaccatcagaagca
gaaaatcttgaagtaccacagagcatagacaggaatggctacatcaagaggcctatgaat
gcgttcatggtctgggcgagaatccacaggcctgccctgtccaaggccaacccaacagcc
aataatgcagacatcagtgtgcagctaggaatagagtggagcaagcttactgaggaagag
aagaggccctactatgttgaagcacgtaaactcaaagacaagcacagacaggagttccca
ggttggatctatcagcccagacctggaaaaagaaagtgctacccttctgtgatgtccttt
gctcctgaaccatcctgctgctctgcagggacaagtggacctgcagctgagtcttatccc
atgaccatgatgactatggccaatactaacaccagctcctgtgttccatacacacaggcc
acaggctctaatgaccatggtctccaggtggctataacggcagctccaaatgcctctcag
actaccagcccagtctccatattcttccagactactgcctgcccacatccccatccaaca
gccacaacctctggtggtaagcctgcagaacgcaagcatgaagccagtcactctgccagc
aatcctgaagaagctcccaaacccagaaaaatcagcaggcaacaggcctactacaattct
gccaatgagatgccctcaacaagcatggcatccagctctagaggtctccaaatgccactc
cctaacatggctcaccctcacatgtatcctccatctcccataccacatccagtgggcctc
ttccccacccctcgcttcccctttgctccgccctacttcatgcctggacccaatttttat
cctccaggatcatacccttacctacacagcccatactcctacccagttctccaaccccag
gatttctcaaaccccatggctactcccatggctactccgggctacccctatgatgacaac
tacgatcagcatgagtccacattttcccttctcaacagagactacccgtttcggcagagt
ggagagggcgggcagagatgtcaagggcaggcccccactgcctctgagctcctaggttcg
gtcccacttctggacgtacgtgccctggagaacgtcttcaccaactctgccagtgtccag
gaggtccaagtccccaatgaggaggacgaggaagaagtgcgcgtgatgagaattctctag
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