Oncorhynchus kisutch (coho salmon): 109892374
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Entry
109892374 CDS
T09179
Name
(RefSeq) exosome RNA helicase MTR4-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109892374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109892374
03041 Spliceosome [BR:
oki03041
]
109892374
03009 Ribosome biogenesis [BR:
oki03009
]
109892374
03016 Transfer RNA biogenesis [BR:
oki03016
]
109892374
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109892374
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109892374
Spliceosome [BR:
oki03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109892374
Complex C
U4/U6.U5 tri-SnRNP related factors
109892374
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
Pre-60S particles
Helicases
109892374
Transfer RNA biogenesis [BR:
oki03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109892374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
109892374
NCBI-ProteinID:
XP_020340453
Ensembl:
ENSOKIG00005001419
LinkDB
All DBs
Position
LG6:14885994..14936586
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTSSTKKKPPIPEKGKATSNNDKGGPNEPPAAKTKREADNDGTD
EVVFGKKARLETVSTEEINLADCMPKVKVEPVETVEGCNHEVALPANEEYTQLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALRGKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSSGGGKWDTKGRKG
GTRGPSNVFKIVKMIMEKNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKQLVEEVFNN
AVDCLSDDDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMG
KLEKMYNAIEIPNEESVVTYYKIRQQLAKLGKEIEEFVHKPKYCLPFLQPGRLVKVKNEE
VDFGWGVVVNFSKKSNVKASTGDADPLYVVEVLVHCSQESVKNAATEAAKPAATGEKGEM
QVVPVMLRLLTSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKIIQKVEAFEHRMYSHPMHSDPSLEAVYSLCEKKALIAGDIKGAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEVKGRVACEISSADELLLTEMVFNGLFNDLTAEQVT
ALLSVFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEETYLDKFRPHL
MDVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFADG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgttcgatgaagaacaaacatcttca
actaaaaagaaaccaccaatacctgaaaaggggaaagcaaccagtaataatgataaaggc
ggaccgaacgagccccctgctgccaagaccaagagggaagcagacaacgacgggacagat
gaggtggtgttcgggaaaaaggccaggctggagactgtctctacagaggagatcaatctt
gcagactgcatgcccaaagtgaaggtggagccggttgagacagtggaaggatgcaatcac
gaggtggctctgccagccaatgaggagtacacacagcttaagcctcgtgtggggaaagca
gccaaggagtaccccttcattctggatcccttccaacgtgaggccattctgtgtatagac
aacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgtgcagag
tatgccatagctctagccctgagagggaagcagagggtcatcttcaccagccccatcaag
gccctgagtaaccagaagtacagagagatgtacgaagagttccaagatgttggcttgatg
accggtgatgtcaccatcaaccccactgcctcctgccttgtcatgaccactgagattctg
aggagcatgttgtaccgagggtcagaggtcatgagagaggtggcatgggtcatctttgat
gagatccattacatgagagatgcagagcgtggtgtggtctgggaggagaccatcatcctg
cttcctgacaatgtccactatgtcttcctgtccgccactatccccaacgccaagcagttt
gctgagtggatctgccacctccacaaacagccctgtcacgtggtgtatactgactttcgg
cccacccccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgtggtg
gatgagaacggagagttcagagaggacaacttcaacacggccatgcaggtgctgagagac
acaggggactctgggggcagcagcggaggtggcaagtgggacaccaagggacgcaaagga
ggaacacgagggccgtccaacgtgttcaagatcgtgaagatgatcatggagaagaacttc
cagccggttatcatcttcagcttcagtaagaaggagtgcgaggcctacgccctgcaggtg
tccaagctggacttcaacacagatgaggagaagcagcttgtagaagaggtgtttaacaac
gctgtagactgtctgtctgacgatgacaagaagctgcctcaggtagagaatgttctacca
ctactgaagagaggtatagggattcaccacgggggactgctccccatcctgaaggaaacc
attgagatcctcttctctgaggggctaattaaggcgttgtttgccacagagacctttgcc
atgggcatcaacatgcctgcccgcaccgtcctgttcaccagcgcacgcaagtttgacggc
aaagacttccgatggatcacgtctggcgagtacatccagatgtctggccgagctggcagg
agagggatggacgagagaggtattgtcatcttcatggttgatgagaagatgagccctgca
gtggggaaacagctgctcaagggctcagctgaccctctcaacagtgccttccacctcacc
tacaacatggttctcaacctgctgcgggtggaggagatcaacccggagtacatgctggag
aagtctttctaccagtttcagcactacagggctgtgcccggcgtcgtagagaagatgggg
aagctggagaagatgtataacgccatagagatccccaacgaggagagtgtggtcacttac
tataagatccgccagcagctggctaaactgggcaaagagatcgaagagtttgtccacaaa
cccaagtactgccttcctttcctccagcctggtagattggtcaaggtcaaaaacgaagaa
gttgactttggatggggcgtagtcgttaatttctcaaagaagtcaaacgtcaaggccagt
acaggtgatgcagaccctctgtacgtggtggaggtgcttgtccactgtagtcaggagagt
gtgaagaatgcagctacagaggctgctaaacctgctgccactggggagaagggtgaaatg
caggtggttcctgtgatgctccgcctcttgacctctatcagttcagtccgtctctacatc
cccaaagacctccggccttatgacaacagacagagcatgctgaaatccatacaggaggtg
cagaagcgctttccagacggagttcctctgctggaccccattgatgacatgggcatcaag
gacccaggcctgaagaagatcatccagaaggtggaggcattcgaacacaggatgtactct
caccccatgcactctgaccccagcctggaggctgtgtactccctctgcgagaagaaagcc
ctgattgcaggggacattaaaggggccaagcgggagctgaaaaaggctaggaccgtcctg
cagatggacgagctgaagtgcaggaagcgtgtcctgagacgtctggggttcgctacttcc
tctgatgtcatcgaggtgaagggcagagtggcctgtgagatcagcagtgctgatgagctg
ctgctgactgagatggtgttcaatggtctgttcaacgatctgactgcagaacaggttact
gctctgcttagtgtcttcgtcttccaggagaatgcgaatgagatgcccaagctgacagag
cagctggctggaccactgagacagatgcaggagtgtgccaagcgcattgctaaggtgtct
gcagaggctaaactggaagtggatgaggagacctatctggacaagttcaggcctcacctg
atggatgtggtctacacctgggctaacggatccaccttcgctcagatctgcaagatgacc
gacgtcttcgaaggtagtatcatccgctgtatgcgtcgcctggaagaactgctgcgtcag
atgtgtcaggcagccaaggccatcggcaacaccgagctggagaacaagtttgcagatggt
atcacaaaaatcaagagggatattgtgtttgctgctagtctatatctgtaa
DBGET
integrated database retrieval system
