Oncorhynchus kisutch (coho salmon): 109892416
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Entry
109892416 CDS
T09179
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM23 isoform X1
KO
K07963
tripartite motif-containing protein 23 [EC:
2.3.2.27
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
109892416
09183 Protein families: signaling and cellular processes
04031 GTP-binding proteins [BR:
oki04031
]
109892416
Enzymes [BR:
oki01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109892416
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
109892416
GTP-binding proteins [BR:
oki04031
]
Small (monomeric) G-proteins
Arf/Sar Family
Others
109892416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arf
Roc
Ras
SRPRB
G-alpha
zf-RING_UBOX
zf-RING_5
zf-B_box
Gtr1_RagA
zf-RING_2
MMR_HSR1
zf-C3HC4
CEBP_ZZ
FemAB
Motif
Other DBs
NCBI-GeneID:
109892416
NCBI-ProteinID:
XP_020340517
Ensembl:
ENSOKIG00005009707
LinkDB
All DBs
Position
LG6:16953454..16962666
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AA seq
587 aa
AA seq
DB search
MAAAVGVNKQGTAATMDVCVRHVRGATSSTVKVLECGVCEDVFSLQGDKVPRLLLCGHTV
CHDCLTRLPLHGRAIRCPFDRQVTELGDSGVWGLKKNFALLELLERLQNGASSQLSMAED
ALTGMGESIIRCDEDESHTASMYCTVCATHLCADCSQLTHSTRTLAKHRQVPLADKPHEK
TLCPQHQVHAIEFVCQEELCQPGPLMCCVCKEYGKHQGHKHAVLEAEANLIRASILDMAH
CIRTFTEEVSEYSRKLVGIVQQIEGGERIVEDGIGMAHTEHVPGTAESARSCVRAYFADL
HETLCRQEEMALSVVDAHVRERLIWLRQQQEDMTILLSQVSTACLHCEKTLQQDDCRVVL
AKQEINRLLETLQKQQQQFTELADHIQLDAGIPVTFTKTTLFSLFQDNRVHIGPKMEIRV
VTLGLDSAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKH
YYLNTQAVVFVIDSCHRDRLMEAHSELAKLLTEKELRDALLLIFANKQDVPGAVSVEEMT
ELLSLHKLCCGRSWHIQGCDARSGMGLHEGLDWLSRQLVAAGVLDVA
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgctgtgggtgtaaacaagcaggggaccgcagcaacgatggatgtctgtgtt
cggcacgtcaggggggccacaagcagcaccgtgaaggtgttggagtgtggggtgtgtgaa
gatgtcttctctctccagggggacaaggtcccccggctgctgctctgtggtcacacagtc
tgtcatgactgtctgacccggctgcccctgcatggtagagccatccgctgccccttcgac
agacaggtcacagagctgggggactctggtgtgtggggtctgaagaagaactttgccctg
ctggagcttctggagaggctgcagaatggagcgtccagccagttgagcatggcagaggac
gccctaacaggcatgggagagtcaataatccgctgtgacgaggacgagagccacacggcg
tctatgtactgcacggtgtgtgccacccacctgtgtgccgactgctcccagctcacccac
tccacccgcaccctggccaagcaccggcaggtacccctggcagacaagccccacgagaag
acactatgcccgcagcaccaggtccacgccatcgagttcgtctgtcaggaggagctctgc
cagcctgggccgctcatgtgctgcgtgtgcaaagagtacggcaagcaccagggacacaag
catgcagttctggaggcagaagccaatctgatccgtgcgtctatcctggacatggcccac
tgtatccggacgttcacagaggaggtgtcggaatattccaggaagctggttgggatcgta
cagcagattgagggaggagaacggatagtggaggatggcatcggcatggcacacaccgag
catgtcccaggcacggcagagagcgcgcggtcctgcgtacgggcctacttcgccgacctc
cacgagacgctgtgcagacaggaggagatggcgctcagtgtagtggacgcacatgtcagg
gaaaggctcatttggctccggcaacagcaggaagacatgaccatcctactgtcccaggtc
tccacagcctgcctgcactgcgagaagacactgcagcaggatgactgcagagtggtcctg
gccaagcaggagatcaacagactgttggagactctgcagaaacagcagcagcagttcact
gagctggccgaccacatccagcttgacgccggtatccccgtcaccttcaccaagactaca
ttgttttctctgttccaggacaaccgggtccacatcggacctaagatggagatccgggtg
gtgaccctgggactggatagtgcagggaaaaccaccatcctcttcaagctgaaacaggac
gagtttatgcagcccatccctaccataggttttaatgtggagacagtggagtataagaat
ctcaagttcaccatctgggacgttggtgggaaacataagctacggcctctatggaagcac
tattacctgaacacacaagcggtggtgtttgtgattgacagctgtcacagggataggctg
atggaggcccacagtgaactggccaaacttctgacagagaaggagctgagagacgccctg
ctgctcatcttcgccaacaaacaggatgtccctggggctgtgtcggtggaggagatgacg
gagctgctgagtctccataagctgtgctgtgggaggagctggcacatccagggatgtgac
gcccgcagtggcatggggctccacgagggcctggactggctgtcccgacagctggtggct
gcaggtgtactggacgtggcctag
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integrated database retrieval system
