Oncorhynchus kisutch (coho salmon): 109892457
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Entry
109892457 CDS
T09179
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109892457
Membrane trafficking [BR:
oki04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
109892457
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
EGF_CA
cEGF
SGL
Motif
Other DBs
NCBI-GeneID:
109892457
NCBI-ProteinID:
XP_020340593
Ensembl:
ENSOKIG00005004075
UniProt:
A0A8C7M5E2
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Position
LG6:18723923..18758705
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AA seq
874 aa
AA seq
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MLTSILEILILRICLQQCGFVHGSKTECEPSQFQCGNGRCIPSVWQCDGDEDCSDGSDEN
TCVRKTCAEVDFVCRNGQCVPKRWHCDGEPDCEDGSDERVEVCHTRTCHVNEFSCGAGST
QCIPVFWKCDGEKDCDNGEDEMSCGNITCASLEFTCASGRCISLNFVCNGEDDCGDGSDE
QECAPSSCGPSEFQCGNATCIPGNWVCDDDVDCQDQSDESPQRCGRQPTPPAKCSSSETQ
CGSGECIHRKWRCDGDPDCKDGSDEANCSVRTCRPDQFKCEDGNCIHGSRQCNALRDCAD
GTDEVNCTNLTQCNGPDKFKCRSGECIEMSKVCNKARDCPDWSDEPINECNLNECLLNNG
GCSHICRDMVIGFECDCTPGLQLIDRKTCGDINECMNPGICSQICINLKGGYKCECHNSY
QMDPTTGVCKAVGKEPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVALDADFTQQRIFW
ADLSQRAIFSTVLDKRGDVGSHVKVIDNVTPVGIAVDWIYNNIYWSDLGTKTIEVANFNG
TKRKVLFSSGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVQTDIQWPNG
ITLDLIKSRLYWVDSKLHMLCSVDLNGDNRRKVLQSPDYLAHPFALTVFEDRVFWTDGEN
EAIYGANKFTGSDVITLASNLNEPQDIIVYHELIQLSGTNWCNEKGLNGGCAYMCLPAPQ
INKYSPKYTCACPQDQTLASDALHCRPVTPSAPSKDDGKALIYPTHPQVPNVVPKPVPAE
ANSSTSIHEVNFTARGSTAAWAILPVLLLAMAAAGGYLMWRNWQLKNKKSMNFDNPVYLK
TTEEDLNIDISRHTSNIGHTYPAISVVNTEDDLS
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgtctattctggagattcttatcctacggatatgtcttcaacagtgcggtttt
gtacacggatcaaagacagaatgtgagcccagtcagttccagtgtgggaatggtcgctgc
atcccgtctgtctggcagtgtgacggggatgaggactgctcggacgggagtgacgagaac
acctgcgttcggaagacctgtgcagaggtggactttgtctgtcgtaatggccaatgcgtc
cccaagagatggcactgcgacggagagccagactgtgaggatgggtctgacgagcgtgtg
gaagtgtgccacaccaggacctgccatgtgaatgagtttagctgtggggccgggtccacc
caatgcatccccgtcttctggaagtgtgatggagagaaggactgcgataacggagaggat
gaaatgagctgtggtaacatcacgtgcgcctcgctggagttcacctgtgcaagtggccgc
tgcatctcccttaacttcgtctgtaacggggaggacgactgtggtgacgggagtgatgag
caggaatgtgctccgtcctcctgtggtcccagcgagtttcagtgtggcaatgccacctgt
atccctggcaactgggtctgtgacgatgacgtggactgccaggaccaatcggatgagtcc
cctcagcgatgtggtcgccaacccacgccgccggccaaatgttcatccagcgagacacag
tgtgggtctggggagtgcatccaccgcaagtggcgatgtgacggggacccagactgcaag
gatggcagcgacgaagccaactgttctgttcgtacctgcagaccggaccagttcaagtgt
gaggacggcaactgtatccacggcagcagacaatgcaacgctttgcgtgattgtgcagat
ggcaccgatgaagtcaactgcacaaacttgacacagtgcaatggccctgacaaattcaag
tgtcggagtggagagtgtatagagatgagtaaagtgtgcaacaaggcccgggactgtcca
gactggagcgacgagcccatcaatgagtgcaacctgaatgagtgtctgctgaacaatgga
ggctgctcccacatctgcagggacatggtgattggcttcgagtgtgactgcacccctgga
ctgcagctcatagaccgcaagacctgtggcgacatcaatgaatgtatgaaccctgggatc
tgtagtcagatttgtatcaacctgaagggaggttataagtgcgagtgccacaacagctac
cagatggaccccaccacaggagtgtgcaaggctgtgggcaaggaaccctgtcttatcttc
actaaccgccgggacatccggaagctgggtctggagcggagggagtacacccagattgtg
gagcagctgcggaacacagtggcactggatgccgacttcacccagcagaggatcttctgg
gcagacctgagccagagggccatctttagcacggtgttggataagagaggagatgtagga
agtcatgtgaaggtaattgataatgtgacacctgtggggatcgctgtggactggatctat
aacaacatctactggtcagacctcggcaccaagaccattgaagtggccaacttcaacggc
accaagcggaaagttctcttcagcagtggtttgaaagagcctgcatccatcgctgtggat
ccactttctggattcctctattggtcagactggggtgaaccagcgaagattgagaagtct
ggtatgaacggggttgacaggcaggtcctggtccagactgatattcagtggcccaatgga
atcactctagacctgatcaagagcagactgtactgggtggactccaagctgcacatgctc
tgtagcgtggacctgaacggcgacaaccgtaggaaagtgctgcagtccccagactacctg
gctcacccctttgcgctcactgtgttcgaggatcgagtattctggacagatggggaaaac
gaggcgatctacggagcaaacaagttcacaggctctgatgtgattaccctggcaagcaat
ctgaacgagccgcaggacatcattgtttaccatgagctaatccagctgtccggaacaaac
tggtgcaatgagaagggtctgaacggaggctgtgcctacatgtgcctgccagcgccacag
atcaacaaatactcccccaagtacacatgtgcgtgtccccaagaccagacgctagcctca
gacgcccttcactgcagaccagtgaccccttcagctccctcaaaggatgatgggaaagct
ctaatatatcccactcacccccaagtgccaaatgttgtccccaaacctgtccctgctgaa
gccaacagcagtacatccatccatgaggtgaacttcacagctagaggatctacagctgcc
tgggctatcctccctgtgttgttgctggccatggctgcagcaggaggctacttgatgtgg
cgtaactggcagctgaagaataagaagagcatgaacttcgacaatccagtgtacctgaaa
accacagaagaagacctcaacatagatatcagcaggcacacctccaatataggccacaca
tacccagcaatatcagtggtgaatacagaagatgacttgtcataa
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