Oncorhynchus kisutch (coho salmon): 109892652
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Entry
109892652 CDS
T09179
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03013
Nucleocytoplasmic transport
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109892652
09122 Translation
03013 Nucleocytoplasmic transport
109892652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109892652
03041 Spliceosome [BR:
oki03041
]
109892652
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
109892652
Spliceosome [BR:
oki03041
]
Complex C
Other components
EJC/TREX
109892652
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109892652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
109892652
NCBI-ProteinID:
XP_020340934
Ensembl:
ENSOKIG00005020622
LinkDB
All DBs
Position
LG6:29503788..29572861
Genome browser
AA seq
1570 aa
AA seq
DB search
MATRIIPADWIKNWEKSGKHEFVQLCKNLAYKTNHDSTIKDIQAALYELCWHVIQGNFKL
DLSASVLCDLMDLRDDMPSILADVFSILDIETSSLEEKNKRDHYTQLVGACLFFVPDAIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNITSHIVLESIKSLIGCFNLDPNRVLDIILEVYECRSDQDEFFLPLIKSYMCEPLTLC
HILGFKFKFNQEPNEETPTSLYHIAAALLHHNLIELEDIYVHLMPLDASIVEEHKREITE
AKQIARKLTMVVVPSEKTEDKEREKEEEKNDKAPDNQKLGLLEALLRIGDWHHAQSIMDQ
MPSFYATSHKAIALALCQLLHLTVEPLYRRAGVPKGAKGCLLRPLKNKRAPRPAESFEDL
RRDVFSMLCYLGPHLSHDPILFAKIVRLGKGFMKEYQSEGRNDNIKDKMDTLLSCFLSIA
DQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLLVKVKAQTVD
RAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLIGPVVDSLKYLTSL
NYDVMAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTNT
LKAGKSFDLLILKEVVQKMAGIEITDEMTSEQMEAMTGGEQLKAEGGYFGQIRNTKKSSQ
RLKDALLDHDLALPLCLLMAQQRNGVVFLEGGEKHLKLVGKLYDQCHDTLVQFGGFLASN
LSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYGHQILSKYDELKKAEKSNRQQQKVH
KYVAACELVMSPVHEAVVSLHPPRVWDDLRPQFYATFWSLTMYDLAVPHNAYDREVKKLQ
LQVQVIEENPDVPMNKKKKEKERCTALQEKLQEEEKKQLEHVQRVLHRLKLEKDNWLLAK
STKNETITKFLQLCLFPRCIFSAIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSDIIYT
VASCTENESRRYGRFLCCMLETVTRWHSDRAVYEKECGNYPGFLTIFRATGFDGGNKADQ
LDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPCYPKVLNLGQALECR
VHKICLEEKEKRPDLYALAMGYSGQLKGRKAHMVPENEFHHKEQPLRSATPVSQQNGPGT
TAKPATNASKTEEGVSEDADRAKDKSQGAAKPANKANSTAAKVTTSNGNGAPNSTKTLKE
RDDKEKSGKEKKEKKEKTPGSTLETKGESRREKQRDERGASGKEERAPREGKEKTPKADR
DKQKAEEKSNKEDNKAKTGNGEPKEPSRERDTGAKESKSKEKGGDRSAMSGSLKSPVPRL
ESAESERDHKRRKLETHSSPSHSSSVKDNSNEPKDSASKHHINYNSVARSKSRERETDKK
ESENTRGRSKEKKTDNKDRKDRKRDHMTTDREMSLESKRRKDENGTNSSNKHSKSASPSS
GSPVSADKEKTKRSKSSSKEKGESAKPERNSSGGKKESRHDKEKSDKKEKRDSSGGKDEK
KHHKSSDKHR
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacgtatcatccctgctgattggatcaaaaactgggaaaaatctggaaaacac
gagtttgtacaactatgtaagaatcttgcatacaaaacaaatcatgacagcacaataaaa
gatatacaggcagctttgtatgaactctgctggcatgtcatacaggggaacttcaagctg
gacctttctgctagcgtcctctgtgacttgatggatctgcgggatgacatgccatccatt
ttagcagatgttttcagtatactagacatagagaccagctctttagaggaaaaaaacaaa
cgtgaccattacacccaactagtgggagcgtgtctgttctttgtgccagatgccatcctg
aaggagaggctggacccagagaccctggagtccctgggactcataaagcaagctcatcag
ttcaaccagaaaatcgttaaaatcaagaccaaactattttacaagcagcagaaattcaac
ttgctgagggaagagaatgagggctatgccaagctgatcactgagctgggccaagacctt
tcaggcaacatcactagccacatcgtcctagagagcatcaagtccctaataggatgcttc
aacctggaccccaaccgcgttctggacatcatcctggaggtgtacgagtgtcgctctgac
caagacgagttcttcctgcccctcatcaagtcctacatgtgtgaacccctcaccctctgc
cacatcctgggcttcaagttcaagttcaaccaggagccaaatgaggagacccccacgtca
ctctaccacatcgctgccgccctcttgcatcacaaccttatagagctggaggacatctat
gtgcacctgatgccactggatgccagcattgtagaggagcacaagagagaaatcacagag
gccaagcagatcgcccgcaagctcaccatggtggtggttccctccgagaagactgaggac
aaggagagagagaaggaggaagagaagaacgacaaggctcctgataaccagaagctgggt
ctgttggaagcgctgctgaggatcggagactggcaccatgcccaaagcattatggaccag
atgccctccttctacgccacctctcacaaggccattgctctggcgctgtgccagctgctg
catctgactgtggagccactgtaccgcagagccggggtccccaaaggggccaagggatgt
ttgttgaggcccctgaagaacaagcgggcccccaggcctgcagagagctttgaggacctg
cgcagggatgtgttcagcatgctctgctacctggggccccacctctcccatgaccccatc
ctctttgccaagatagtacgcctgggcaagggctttatgaaagagtaccaaagtgagggt
agaaatgacaacatcaaggacaaaatggacacattgctgagttgtttcctgagcattgca
gaccaggtgctgctgccctcgctctctctcatggagtgtaacgcctgcatgtcagaggag
ctctggggcctcttcaaactcttcccctaccagcacaggtaccggctatacgggcagtgg
aagaatgagacctacacaagccacccacttctggtcaaggtcaaagctcagactgtggac
agagccaaatacatcatgaagcgattaaccaaagagaatgtgaaaccatctgggcgccag
ataggcaagctgagccatagcaaccccaccatcctctttgactatatcctgtctcagatc
cagtggtatgacaacctcatcggtccagtggtagactcccttaaatacctcacctcactc
aactatgacgtcatggcttactgcataattgaagcgctggcaaatccagagaaagagaag
atgaagcatgacgacactacgatctcctcctggcttcagagcctggccagtctgtgtgga
gcggtattcaggaaatacccaattgagttagctggcctcctccagtatgtgaccaatacg
ctgaaagcagggaagagttttgacctgttgattctgaaagaggtggtgcagaagatggct
gggatcgagatcactgacgagatgacatcagagcagatggaagctatgactggaggggag
cagctcaaagcagagggtggttactttggtcagatccgtaacactaagaagtcgtcccag
cgtctaaaggatgccctgttggaccatgatctggccctgcccctctgtctcctcatggcc
cagcaacgcaacggagtggtctttctggaggggggtgagaaacacctcaaactggtgggc
aagctgtatgaccagtgtcacgacaccctggtgcagtttggtggcttcctggcctccaac
ctgagtactgaggactacatcaagcgtgttccctccattgacatcctctgtaaccagttc
cacacgccccacgatgctgccttcttcctctcacgccccatgtatggacatcaaatcctg
tctaagtatgatgagctgaagaaagctgagaagagcaaccggcagcagcagaaggtccat
aagtacgtggctgcgtgcgagctggtgatgtcgccggtgcacgaggccgtggtgtccctg
cacccaccccgtgtctgggacgacctccgaccccagttctacgccaccttctggtcgctg
accatgtacgacctggctgtgccacacaatgcctacgaccgcgaggtgaagaagctccag
ctccaggtgcaggtcatcgaggagaaccctgatgtgccaatgaacaagaagaagaaggag
aaggagcgctgcacggccctacaggagaagctgcaggaggaggagaagaagcagctggag
cacgtccagagggtcctgcaccgcctcaaactggagaaggacaactggctcctcgctaaa
tccaccaagaatgagaccatcactaagtttctgcagctgtgtctgtttcctcgctgtatc
ttctctgccatcgacgctgtgtactgcgcccgctttgtggagctggtgcaccagcagaag
acacccaacttctgcaccctgctctgctatgaccgggtgttctctgacatcatctacacg
gtggccagctgcacggagaacgagtcgcgacgctacggccgcttcttgtgctgcatgttg
gagacggtgacccgttggcacagtgaccgagctgtctacgagaaggagtgtggtaactac
ccaggcttcctgaccattttcagagccacaggcttcgacggagggaacaaagcagaccag
ctggactatgagaacttcagacatgtagtgcacaaatggcactacaagctgactaaagca
tcagtccactgcttggagacgggggaatacacccacatccggaacatcctgatcgtgctg
accaaaatcctaccctgctaccccaaagtgctgaacctgggccaggcactcgagtgccgt
gtccacaagatctgtctggaggagaaggagaagaggccagacctctatgccttggccatg
ggctattctggccagttgaaaggcaggaaggcgcacatggttcctgagaatgagttccac
cacaaggagcagccgttgaggagcgccacccctgtcagccagcaaaacggccctggcacc
acggccaagcctgccaccaacgccagcaagacggaggagggcgtcagtgaggacgccgat
cgagccaaggataaatctcagggtgcggcgaagccagcgaacaaagccaacagcacagcg
gccaaagtgaccaccagcaacgggaatggggctcctaacagcacaaaaaccctcaaagag
agggatgacaaagaaaagagcgggaaggagaaaaaagagaaaaaggagaagactccaggc
agcactctagagacgaagggggagagccggcgggagaagcagagagacgagagaggagca
agtggcaaggaggagcgggcgccacgcgagggtaaggagaagacgcccaaggcagaccgg
gacaagcagaaggcggaagagaagagcaataaagaggacaacaaggccaagaccggcaac
ggagagcccaaggagccatccagggaacgtgacaccggagccaaggagtctaagagcaaa
gagaagggaggagacaggagtgccatgtccggatccctcaagtctccagttccccgattg
gagtctgctgaatctgagagggatcacaaaaggcgaaaactggagacccactcttcacca
tcccattcctcctctgttaaggacaatagcaacgaacccaaggactctgcatccaagcac
cacatcaactacaattcggtcgcgcggtccaagagcagagagagggagacggacaagaaa
gagtcagagaatacccggggccgttccaaagagaagaagaccgacaacaaagaccgaaag
gacaggaagagagatcatatgaccactgaccgtgagatgagcctagaatccaaacgcaga
aaagatgaaaatggaaccaattcctccaacaaacacagcaagagcgccagtccctcctca
ggctccccagtctcggctgacaaagagaagaccaagaggtcaaagtcctctagcaaggag
aagggagagtctgctaaacctgagagaaactcctccgggggcaagaaggagtctaggcac
gacaaagaaaaatctgacaagaaggagaagagggacagcagtggtggaaaggatgagaaa
aaacatcataagtcttctgacaagcacagataa
DBGET
integrated database retrieval system
