Oncorhynchus kisutch (coho salmon): 109892703
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Entry
109892703 CDS
T09179
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109892703 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109892703 (nup98)
03036 Chromosome and associated proteins [BR:
oki03036
]
109892703 (nup98)
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109892703 (nup98)
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
109892703 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
109892703
NCBI-ProteinID:
XP_020341010
Ensembl:
ENSOKIG00005040985
LinkDB
All DBs
Position
LG6:complement(31278950..31305133)
Genome browser
AA seq
1828 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTGFGATTGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGTASGTSTSLFGSTNTGGGGGL
FSQQSNAFGAAKPASFGTFGTSTANTGGLFGATNSNPFGGASASLFGASGFTQQAAQPGT
TVKFNPATGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNPMA
APTGGLFGTAAAATPSTGAAGLFGSSATNTGFSFGQAKTNFGTSTGGFGTATGSLFGQQQ
QPQQAQQAASLFKPFGQATTTPNTGFSFGNTSTMGQPQQTSTMGGLFGSTAASQAGGLFG
NTAQTTPATGFGTGTGLFGQTNTAFGNVGTQQSLFGNKTAGFGATTTSASSFGTGTGLFG
NKSALTLGTGTNPSNFGFGPTAAGGSLFGNKTAAGGLGTGLGAGFGAAVGTGQMSLFGNN
KTLGSTLGTIGAFGPQGFSTGTSTLGFGAQQQPVALTDPNAAAAQQAVLQQQINALAYSP
FGDSPLFRNPLSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALTSSGSSK
SQLFDGLDDDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDTDDLASPPEYPLNG
LSASVDEDDYVREVVEGGAEDDLEINKFYTKPSLQDTISELNAHRVGARGRNGLEVSSED
ISLGEDSIQEEREEEVQEVPPHPAGIVLCRVGYYTIPAMDELAKMVDENGVCVVENFTVG
RKGYGSVFFHGEVNVTGLNLDEIVHFRRKEVIVYPDDKNKPAEGEGLNRRAEVTLDGVWP
NDKTTCTQIKNPERLSEMNYEGRLENASRKQGARFLEYRPETGSWVFEVAHFSKYGLQDS
DEDEEVPLKVDPKKLKTATTLPPGLQQLPPSQQQVAPQAQSTAVLELLSRMSEVDSDMAD
ITQDAPGESMLEEVGESSMGEDKGSRLGTVTPTEHNPVSASSQIASSMGINPHTLQIMKA
SLFAEDDDGDMFLEQGGMKSSLDRASPRILLPGTQGRPSIGGLLQTRFSGAGLFPQLPDV
PFGGGLPGRLSMSRPSAVVPEPSRLSPWPSLGPSFLLPAPAAEATVRTVGARRLGGPVAP
ENSVTLGKGRLLMDAALFTGRSFRVGWGPGWTLVHCGDRLSGAGDKEQDQGDAGAGSFGF
LPKHAKSKRLSDSPFKVVIEQVVGLEPRDSEESQAVYQRPLEIGLKHSTISTEGACPFIQ
PQSGVAALHEYVEWITDLNQEAGAGDGVLAHWALVWTLCEALWGRLGTPEPEPGTSGYLQ
QLERRRSFSAWLSHSATQRIEQEVGLSHGGGHVEAIFSYLTGHRISDACRLAQKSGDHRL
SLLLSQAVGSQYGRELLALQLGDWNRMQTDSFLQEERLRIFALLAGKPVWQSTDCVVNVC
SELDWKRCVAVHLWYMLPPTASIADALAKYEAAFQGSAEGQKYACAPLPPYLDQSVPLDM
DEEESKRPLYDICFHLLKLYSDRHYSLQELLDPLTVTWERLDYRLSWHLWSVLQALHYTH
LSPARQGLIHTSYAAQLESAGLWDMAIYVLLHISEDMLRERAVREMLQLHCPLLETEESA
QKERFLTERLLIPEQWLHLAKATRARRETDRHREALHLYRAGHWNLCHRLVIQHLASDCI
INDNHEYLLEFLEGLAVPERCAVIQDWDTAGRVYLDYIRVIQTLHAIQQMDSAGYKLERL
HTEVTSLCSRIELLPCSTAKDRLAQSEMAKRVANILRVVLSLQQGGEGGEIPLSQLAPHI
GRLPMPEDYALEELRSLTQSYLRQLIVS
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcatttggtgctcctttcgggggagggaccggaggatttggaacttca
tccacgtttggacaacaaaacactggctttggggcgacgacaggtggcttcggggcctca
gcatttggggctaccaacaacactggaggactctttggtgcgacgcagaataaaccagtg
gtgacagccaatcctcaacaaatccacactggtgcaggtagaggaggtggcctgtttggt
tccagtacgttcagccagcccgtaacgtcgtccaccagtagcggctttgggtttggcacg
gccagcggcacgtccactagcctgttcggcagcaccaacacgggcggcggtggaggactc
ttctcccagcagagcaatgctttcggagccgccaaaccagcctcctttggcacttttggc
acgagcacggccaacaccggggggctgtttggggcgaccaactccaaccccttcggaggg
gcgtctgcctccctgttcggagcttcagggttcacccagcaagccgctcagccaggcacc
actgtcaagttcaaccctgcaacaggaagtgacaccatggtgaaagggggtgtgaccacg
agcattaacaccaagcaccagtgcatcacagccatgaaggagtacgagaacaagtcactg
gaggagctgaggttggaggactaccaagcaggaaggaagggccccactaaccccatggct
gcaccaacaggggggctctttgggactgcggccgcagccacccccagtacgggggctgca
gggttgtttggctcctcggccaccaacacaggcttctccttcggccaggccaaaaccaac
ttcggcaccagtactggtgggtttggtacagccacaggcagtctgtttggccagcagcaa
cagccccagcaggcccagcaggcagctagcctgttcaagcccttcggtcaggccacaacc
acacctaacacaggattctcctttggcaacaccagcaccatgggccagccccaacaaacc
agcaccatggggggtctgtttgggagcactgcggcgtcccaggcaggggggttgtttgga
aacacagctcagaccacaccagccacaggctttgggacaggcaccggtctcttcggacaa
accaacaccgccttcgggaacgtcggcacacagcagagcttgtttggtaataagacggca
gggtttggcgccaccaccaccagcgcctcgtcgtttggcacaggcaccggcctctttggt
aacaaatccgccctcaccctcggaacaggcaccaacccatctaactttggttttggaccc
actgctgctggcggaagcctctttgggaacaagacggcagcaggaggactggggaccgga
ctgggagctggctttggagcagcggtgggcactgggcagatgtctctgtttgggaataac
aagacactgggttccactctgggaacaataggagcgtttggaccgcagggattcagcaca
ggaaccagcactctgggcttcggagcacaacaacagcctgttgcgctgacggaccctaac
gcggcggcggcccagcaggcagtgctgcagcagcagatcaatgctctggcctactccccc
tttggtgactcccccctcttcagaaaccccctctctgaccccaaaaagaaggaggagcgt
ctaaagcccaccaatccggcggcccagaaggcgttgaccacgcccactcactacaagctg
acgccgcggcctgcaacacgtgtgcggcccaaagctctgacatcttcgggctcctccaag
tctcagctgtttgacgggctggatgatgacgagccttctctcaccaatggagccttcatg
cccaggaagagcatcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagt
agcccaatcaacagagacacagatgacctggcatctccaccggagtaccccctcaacgga
ctcagtgccagtgtggatgaggatgattatgtgagggaggtggtggagggaggggccgag
gatgacctggagatcaacaagttctacaccaagcccagcctgcaggacaccatctcagag
ctcaatgcccatagggtgggggccaggggcaggaatggcctggaggtgagcagcgaggac
atatcgctgggagaggactctatacaggaggagcgagaggaggaggtgcaggaggttccc
ccacaccctgcaggtatcgttctgtgccgtgtgggctactataccatccccgccatggac
gagctggccaagatggtggacgagaacggcgtgtgtgtggtggagaacttcaccgtgggc
agaaaaggttacggctcagtgtttttccatggcgaggtgaatgtgactgggctgaacctg
gatgagattgttcacttcagacgcaaagaggttatcgtctaccccgacgacaagaacaag
cctgctgagggggaggggctcaacaggcgagcggaggtgactctggatggagtgtggcct
aatgataagaccacttgtactcagataaagaaccctgagcgtctgtctgagatgaactac
gagggccgtctggagaacgcctcacgcaaacagggcgcccgcttccttgagtaccgcccc
gagaccggctcctgggtgtttgaagtggcccacttttctaagtatggcctgcaggactct
gatgaggatgaggaagtgcctctcaaagtggaccccaagaagctgaagacggccacaaca
cttcccccggggctgcagcagcttcctccctcccagcagcaggtggcgccacaggctcag
tccacggctgtgctggagctgctgagccgcatgtctgaggtggacagtgatatggccgac
attacccaggatgccccaggggagagcatgttggaggaggttggggagagcagcatgggg
gaggataagggcagtcggctgggtactgtgacccccacagaacataaccctgtctctgca
tccagtcagattgcctcctcgatgggaatcaacccacacactctccagatcatgaaggca
tctctgtttgctgaggatgatgatggtgacatgttccttgagcagggagggatgaagagc
tctctagacagggcctcccctcgcatcctcctgcctggcactcagggcaggccctccatc
ggtggtctcttgcagactcgtttcagcggggcaggtctcttccctcagctccctgacgtg
ccctttggagggggccttcccgggaggctgtccatgtctcggccgtccgcggtggttcct
gagccctcgcggctctccccctggccctcgctggggccctctttcctgctgccagcccca
gcggccgaggccactgtacggacggtgggggctcgacgcctggggggccctgtagcccca
gagaactcagtcacactggggaagggccgtctgctgatggatgcagctctgttcacgggc
cggtcgttccgggttggctggggtccaggctggactctggtccactgtggagacaggctg
agtggggctggggacaaggagcaggaccagggagacgcaggagctggaagttttggattt
ttgcctaaacatgccaagagcaaacgactctcagacagtccgttcaaggtagtgatcgag
caggtggttggtctggagccgcgggacagtgaggagagccaggcggtgtaccagcggccc
ctggagattggcctgaagcacagcaccatcagtacagagggggcctgccccttcatccag
ccccagagtggggtggccgccttgcacgagtacgtggagtggatcactgacctcaaccag
gaggctggtgccggagacggggtcttggctcactgggctctggtgtggactctgtgtgag
gccctgtggggtcggctgggtacgccagagccagagcctggtaccagcggctacctgcag
cagctggagaggaggaggagcttctcagcctggctgtcccacagcgccacccagaggatt
gagcaggaggtgggcctgagtcatgggggaggacatgtggaggccatcttcagctacctc
actggacaccgcatcagtgacgcctgcaggctggctcagaagagtggggaccaccgcctc
tccctgctgctgtcccaggcggtgggctctcagtatggccgggagctgctggcgctgcag
cttggagattggaacagaatgcagacagactcatttctgcaggaggagaggctacgcatc
ttcgccctgctcgccgggaaacctgtgtggcagtctacagactgtgtggtgaacgtgtgt
tcagagctggactggaagcgttgcgtggcggttcacctgtggtacatgcttcctcccact
gcctccatcgctgacgccctggccaagtacgaagccgccttccagggctctgcagagggt
cagaagtacgcctgcgctcccctgcccccctaccttgaccaatcagtcccgctggacatg
gatgaagaagagtctaaacggccactctacgacatctgtttccacctgctcaaactatac
agcgacagacactacagcctgcaggagttgttggacccgctgacggtgacgtgggagcgt
ctggactaccgtctgagctggcacctgtggtcggtcctgcaggcgctgcactacacacac
ctgagccccgcccgacagggcctcatacacaccagctacgctgcccagctggagagcgct
ggcctctgggacatggccatctatgtactgctgcacatatctgaggatatgctccgtgag
cgtgcggtgagggagatgctccagctgcactgccctttgctggagacggaggagtctgcc
cagaaagagcgcttcctcacagaaagactactgatcccagaacagtggctccacctggcc
aaagctactagagccagaagagagacagacagacacagagaggccctgcacctgtacaga
gcaggccactggaacctctgccacaggctggtcatacaacacctagcttcagattgtatc
atcaatgataaccatgagtacttgttggagttcttggaggggctggctgttccagagcgc
tgtgctgtgatccaggactgggacacggcaggcagagtctacctggactacatcagagtc
atacagaccttacacgccatacaacagatggacagtgctggttataagctggaacgtcta
cacaccgaggtgacatcactctgcagcaggatagagctcctcccctgctccactgccaag
gaccgcctcgcccaatcagagatggccaagcgcgtggctaacatcctgcgtgtggtgttg
agtctgcagcagggtggtgagggtggcgagatccccttgtcccagctagcgccccacatc
ggccgtctgcccatgcctgaggactatgccctcgaggagctccgcagcctcacccaatca
tacctgagacagctcattgtcagctaa
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