KEGG   Oncorhynchus kisutch (coho salmon): 109892786
Entry
109892786         CDS       T09179                                 
Name
(RefSeq) WD repeat-containing protein 82 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    109892786
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109892786
   03036 Chromosome and associated proteins [BR:oki03036]
    109892786
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     109892786
Chromosome and associated proteins [BR:oki03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     109892786
    COMPASS/SET1 complex (yeast)
     109892786
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR90_beta-prop_4th Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N VPS8_N Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_VPS8
Other DBs
NCBI-GeneID: 109892786
NCBI-ProteinID: XP_020341155
Ensembl: ENSOKIG00005048155
UniProt: A0A8C7KYT1
LinkDB
Position
LG1:complement(46031377..46039562)
AA seq 314 aa
MKITDSVLRSFRVARTFRENSQKVNCVDYSSNGESAISSSDDDSIVLYDCQEGKPIRTLY
SKKYGVDLIRYTHGDANTVVYSSNKLDDTIRYLSLTDNKYIRYFPGHTDRVVALSMSPVD
DTFISGSLDMTIRLWDLRSPNCQGLTNPLGKPVCSYDPEGLIFAAGVDSEAIKLYDLRSF
DKGPFASFETLFSRVCEWTGLKFSRDGKQILISTNGGAIRILDAFNGSVLHTFSGYNNSK
GISLEACFTPDSDFVMIGSEDGRVHVWSTESGMKIAVLDGKHSGPINTLQFNPKYMTFAS
ACSNMAFWLPCVGD
NT seq 945 nt   +upstreamnt  +downstreamnt
atgaagattacggacagcgtgttgcgaagttttagggttgctaggacattccgggagaat
tcgcagaaagtcaactgtgtggactacagctcgaacggcgagagtgcaatatctagtagc
gacgacgactccattgttttatatgactgtcaggagggaaaaccaatacggacactgtac
agtaagaagtacggagtagaccttatccggtatacacatggggatgccaacacagtggtc
tacagctccaacaaactagatgataccatccgatacctgtctctcactgacaacaagtac
atccgctacttccctgggcacactgatagggttgttgctctctccatgtcaccggtggat
gacacatttatctctggttccttggatatgaccatacgactctgggacctgcgctctcca
aactgtcagggtcttactaatcctttggggaagcctgtttgctcctatgaccccgagggc
ctgatattcgctgctggggtcgattctgaggcgattaaactgtacgacctccgctccttt
gacaagggcccattcgcctcctttgagactctgtttagccgtgtctgtgagtggactgga
ctgaagttcagcagggacgggaagcagattctcatctctaccaacgggggtgctattcgg
atcctagatgccttcaatggatccgtgctgcacactttctcaggctacaacaacagtaaa
ggcatttcattggaggcctgcttcaccccagactcagactttgtcatgattggttcagag
gatgggagggtccatgtgtggagtacagagagtgggatgaaaatagctgttctggacggg
aagcattcaggaccaatcaacacactgcagtttaaccctaaatacatgacgtttgccagc
gcctgctccaatatggcgttctggcttccctgtgtaggagactga

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