Oncorhynchus kisutch (coho salmon): 109892880
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Entry
109892880 CDS
T09179
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04140
Autophagy - animal
oki04148
Efferocytosis
oki05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109892880 (vps11)
04148 Efferocytosis
109892880 (vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109892880 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109892880 (vps11)
Membrane trafficking [BR:
oki04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
109892880 (vps11)
Hops complex
109892880 (vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
TPR_Vps41
Clathrin
zf-C3HC4_2
zf-rbx1
zf-RING_2
zf-C3H2C3
zf-C3HC4
TPR_GEMI5
Beta-prop_EML_2
zf-RING_5
zf-ANAPC11
WD40_CDC20-Fz
ToxA_N
zf-RING-like
Kbp-5
DLP_helical
DivIC
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
109892880
NCBI-ProteinID:
XP_020341326
Ensembl:
ENSOKIG00005003979
LinkDB
All DBs
Position
LG6:44336865..44363134
Genome browser
AA seq
929 aa
AA seq
DB search
MAAFLQWRRFVFFDKETVKDAGDNGKNFVLPVGISACDSGRGHIVLGDMDGQIWFLTRSL
QLSSFQAYKLRVTHLYQLKQHSILVTVGQDEQGINPLVKVWNPDKRDSGNPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGTCPITGLAFR
QQSKVTHLFVATLEKVHCYTLSVKEYPKLELDTHGCALRCSALTDPSQDSQFIVAGDECV
YLYQPDERGPCFAFDGHKLLAHWHRGYLLLLTRDTKSPNKSEFGSRETSPSEKQILTIYD
LDNKFIAYSASFDDIIDVLAEWGSFYILTRDGKMFVLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDSDGLSEIFRQYGDHLYVKGDHDGAIQQYIRTIRKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSESEVHFDVEIAIKVLRQA
GYHSHAVFLAERHQHHKWYLKIQLEDLKNYQEALRYIGRLPFDQAESNMKRYGKTLMHHV
PDGTTLLLKGLCTDYQPSRDAMERDSLDRGPAVAKKANSEEFISVFANNPRELRAFLEHM
IEVEPFSSQGVYDTLLELRLQDWAHEQDSERKKVLQGAALSLLRSDNTVFDKALVLCQMH
NFKEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDQEVCLWEQALGYFARKEED
CKAYISQVLEHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESQQIEDDERKI
RQYREETAHLRAEIQELRSSAKIFQKTKCSMCNSPLELPSVHFLCSHSFHQHCFESYAES
EAECPTCTPENRKVMDMLRAQDQKRDLHDHFTRQLRCSNDGFSVVADYFGRGVFNKLTLV
TDPPGSKVGVGSLEADLQRDLLIHTKRNT
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgttcttacagtggagacgatttgtgttttttgataaagagaccgtgaaggac
gctggagataatgggaagaactttgtcctcccggttggcatatctgcatgtgactcgggc
cggggccacatcgttcttggagatatggacggtcagatctggtttttgacacgctccctg
cagttgtcctcctttcaggcttacaagctgagagtgacccacctgtaccagctcaaacaa
cacagcattttggtcacggttgggcaggacgagcaaggaattaaccccctggtgaaggta
tggaatccggacaagcgtgacagcgggaatcctctgtgtaccagaatattccctgcaatt
cctgggaacaaaccaacagaggtgtcctgcctcagtgtacacgagaacctaaactttatg
gctattggcttcacagatggcagtgtggtgttgacaaagggtgacataacccgggacagg
cacagtaaaaccctgacactgcatgagggcacctgtccaatcacgggcctcgctttccgt
cagcagagcaaagtcactcacttatttgttgccactctggaaaaagtccattgctacact
ttgtcggtgaaggagtaccctaaactggaactggacacccacggctgtgcgctgcgttgc
tctgcactcacagacccctcccaggactcccagtttattgttgcgggggatgagtgtgtg
tacctttaccagcctgatgaacgggggccctgtttcgctttcgatgggcacaagctactg
gcccactggcaccggggctacctcctgctgctcaccagggacaccaagtctcccaacaag
tctgaatttgggagtagagagacatctccttcggagaaacaaatcttgacaatctacgac
ctggacaacaagttcattgcctacagcgcttcctttgatgacatcattgacgttctggct
gaatggggctccttctacatcctgactcgggatggaaaaatgtttgtgctgcaggagaaa
gacactcagaccaagctagagatgctcttcaagaagaatctgtttgtgatggccatcaac
ctggctaagagccagcacttggacagtgacgggctgtctgagattttcaggcagtacggt
gaccacctctacgtgaagggggaccacgatggagccatccaacagtacatccgcacaatc
aggaagctggagccttcttacgtaatccggaagtttctggatgctcagaggatccacaac
ctgactgcctacctccaggccctgcaccggcagtcgctggccaatgccgaccacaccacc
ctgctgctcaactgctacaccaagctcaaggacagctctaagcttgaagagttcatcaag
agcagcgagagcgaggtccacttcgacgtggagattgcaatcaaggtgctgcgccaggca
ggctaccacagtcacgcagtcttcctggccgagaggcaccagcaccacaagtggtacctg
aagatccagcttgaggacctgaagaactaccaggaggctttgcgttacattggacgactt
cctttcgaccaggcagagagcaacatgaaacgctacggcaagaccctgatgcaccacgtc
cccgacggcaccacactgcttctcaagggcctgtgtaccgactaccagcccagccgggat
gccatggaaagagacagcctggacagaggcccggcggtggccaagaaggcaaattcagag
gagttcatctctgtgtttgctaataacccgcgggagctaagggccttcctggagcacatg
attgaggtggagcccttctcctctcagggggtgtatgacacactgctagaactacggctg
caggactgggcacatgaacaagactctgagaggaagaaggtcctgcagggggcagcactg
tccttgctgaggagtgacaacaccgtatttgacaaggccctcgtcctgtgccagatgcac
aacttcaaagaaggggtcctgtacctctatgagaagggcaaactgtaccagcagatcatg
cactaccacatgcagaatgaggagtatggcaaagtggtggaggcctgcaagcgctacggc
gaccaggaagtatgcttgtgggagcaggcgctgggatactttgcccgcaaagaggaggac
tgcaaggcctacatcagccaagtcctggagcacatcgaccagaacaacctgatgcctccc
ctattggtggtgcagacgctggcacacaactccacagccacgctgtcggtcatcaaggac
tacctgatcaacaagctgcagagggagagccagcagattgaggacgatgagcgcaagatc
cgccagtatcgcgaggagacggcccacctccgcgccgagatccaggaactcagaagcagc
gcaaagattttccagaagaccaagtgcagcatgtgcaacagccccctcgagctgccctct
gttcacttcctgtgcagtcactccttccaccagcactgctttgagagctacgccgagagt
gaggccgagtgtcccacctgcacaccggaaaaccggaaggtcatggacatgctgcgggcc
caggaccagaaacgagacctgcacgaccacttcaccagacagctgcggtgctccaatgat
ggtttctccgtggtggcggactactttggccgtggggtgttcaacaagctaaccctggtc
accgacccgccgggcagcaaggtgggggtgggaagcctggaggcagacctgcagagggac
ctactcatccacaccaagaggaacacttga
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