Oncorhynchus kisutch (coho salmon): 109892921
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Entry
109892921 CDS
T09179
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04270
Vascular smooth muscle contraction
oki04625
C-type lectin receptor signaling pathway
oki04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
109892921
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
109892921
09153 Circulatory system
04270 Vascular smooth muscle contraction
109892921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109892921
Membrane trafficking [BR:
oki04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
109892921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Ribonuc_2-5A
Motif
Other DBs
NCBI-GeneID:
109892921
NCBI-ProteinID:
XP_020341395
Ensembl:
ENSOKIG00005012991
LinkDB
All DBs
Position
LG6:46573675..46707496
Genome browser
AA seq
1495 aa
AA seq
DB search
MSETQSTLTDRVPKKAARTLSILSKDHPPDKKPKSDKNTVPPLQEFDPTGLVQRCVIIQK
DENGFGLTVSGDNPVFVQLVKEDGSAMRAGVQTGDRIIKVNGSLVTHSNHVEVVKLIKSG
SYVALTVLGRPPGLAQVPLSEGEGGDPGVLSSSLSSPHSPGTVGGTEERCSTSTSPQDHI
ISPLSLWEENNTVHSQKVDILQKMLSKQQQDLQAMKEEYSRNPTTKLLKDIQEAKKHIPM
LRGQLRKATGTPQDGSLSPWDGEGGGVGAADGEQTPSSQVESGSNETWTNITVSPSPLPE
SPCQRETPCHNPKTTPRDSLNSCPSPDAEDTPDLNCNFQCSVGSPLTCLNPQIIGVEDDY
FDTEQEQINGQCCCFQSIELLKSRPAHLAAFLHHVVSQFDPAPLLCYLYADLYKQTNSKE
TRRIFMDFYTFFMDRAANLKVAVPESIASELDRRRPELIPEELHRQYTQLLQDTLLPDIQ
GNLEDFRQKRSMGLTLAEGELSKLDTERVRDRVALDRERSCAEHIISKIEDVLLTSQPTE
EEKCTTMQYVILTYMKHLGVKVKEPRSLEPKRVRINFLPKIKKSIKTEKEGEDKVKKPRF
PSILGPPRRPSRVDSTSIGKAIEMNKQRGPQKQLSQPILSIPDLPESLARGCQSRDPGSD
VATHPSAFIASPPHSAPASQGSDPMGCDSDSGLTPSSALPRLSSDWLHSDDTQNRMAHPT
STHFDFSPCTLDQLQEEERESDGVPEGGTPKPARRMQGLGCPDVPNEDDLGNEIECKQDS
PNWQTLVSREVLAGLTPQEIKRQEVINELFYTERAHLRMLKVLDNVFYQKLTRDSILPPG
DIKHIFTNLEEIVQLHVSITEQVTVIRKKNETSVIDLIGDDLLAWFSDGEEEKIKRAVGT
FCSNQPFALELIKTRQKKDQRFTSFMQEAESNRLCRRLQLKDIIPVEMQRLTKYPLLLES
IAKYTEDAAERDKVKRAGECCRKILNYVNQTVKEAENKQRLEDYQRRLDLSSLKQSENPM
ISEFKSLDLTKRKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDERLVLKCHSKNL
AGTADTKHIFSPIIKLNTVLVRSVATDNKSFFVLSMSDNGAQIYELMAQTVSEQRTWQCL
ITQRADTMKTKPHNIIPLPQTDAERDAVEEISTGIPKLSKDPDRLSTGSIQFAEKYVTSS
PGLQPTPTSINPFDSIKSDDKEEESSLLLDRREEEEEEVEEVDEEEVEAFLVGELADRLP
LLQERSCQGIAIDDQEPHDAFVMPPSRAEEALRTLAALRQVLLNHMTSREEGSDKNNENR
KEKEQRKGLAHGARLLRMTSLRGPEDSNSSTSGPTSAAASSPGSSENGTAGREEGAPGSS
ELPSGDTGFFETSEDYGSYNVLGGSGESSTDDDGQASGKGGGRAQWGSDIDLKKLLSSSS
QTGDAGPNLSRQVMTHIRLLQANLQHLKEVETKYNELRQRLSETATDTEENKDES
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagacacagtcaacactcactgacagggttcccaaaaaagcagccaggaccctt
agcattctcagcaaggaccaccccccagacaagaaacccaagagtgacaaaaacacagtc
ccacctctgcaggagtttgaccctactgggcttgtccagcgttgtgtgatcattcagaaa
gatgagaacggctttgggctgacggtgagcggagacaaccctgtatttgtgcagctggtc
aaagaggatggctctgccatgcgagcgggagtccagacgggtgataggatcatcaaggtt
aacgggagcttagtaacacattcaaaccatgtagaagtcgtaaagttaatcaaatcgggc
tcctatgtggccctcacagtgctggggaggcccccgggactggcccaagtccccctgtca
gaaggcgagggtggagacccaggggtcctgtcgtcgtccctctcctcaccccactctccg
ggaacagtggggggaacagaggagcgctgctccacctccaccagtccccaggaccacatc
atctccccgctgtccctctgggaggagaataacactgtacacagccagaaggtggacatc
ttacagaagatgctgtccaagcagcagcaggacttacaggctatgaaggaggagtacagc
aggaaccccacaacgaaactactgaaggacatccaggaggccaagaaacacattcctatg
ctacgtggccagctcagaaaggccacaggcacacctcaggatggctccctctccccctgg
gacggtgagggggggggcgttggggcagccgatggagagcagaccccctcctcgcaggta
gagagcggcagcaatgaaacctggaccaatatcactgtgtctcccagtcccctccctgag
agtccgtgccaaagagagaccccctgccataacccaaagaccaccccccgagacagcctc
aactcctgcccctcgcctgacgccgaggacacgccggacttgaactgtaacttccagtgt
agtgtgggcagccccttgacctgtctcaacccccagatcatcggagtagaggacgactac
tttgacaccgagcaggaacagatcaatggtcagtgttgttgtttccagagtatagagctg
ctcaagtctcggcccgctcacctggccgccttcctccatcatgtggtctctcagtttgac
cctgcacctctgctgtgctacctttacgccgacctgtacaagcagaccaactccaaagag
accagacggatcttcatggatttctatactttctttatggaccgagcagcgaatctgaaa
gtagctgtgcctgagtctattgcctctgaactagatcggcggagacctgagctgatccca
gaggagctacacagacagtacacacagctgctacaggacacactgctaccagacatccag
gggaacctagaggacttcaggcaaaagcgcagcatgggtctgaccttggcagagggggag
ctgtctaaactggacacagagagggtgagagaccgcgtggcgctggatagagaacgctcc
tgtgctgaacacatcatctccaagatagaggacgtcttgctgacgtcacagcccacagaa
gaggagaagtgcactactatgcagtatgttatcctcacatatatgaaacacctgggagtt
aaagtgaaggaacctcgtagcctagagcccaaacgagtccgcatcaacttcctacccaag
atcaagaagagcatcaaaactgagaaagagggggaggataaggtgaagaagcctcgtttt
cccagcatcctcggccctcctcgtcggcccagccgtgtggactccacttcaatcggcaag
gccatagagatgaacaagcagcggggccctcagaagcagctctcccagcccatcttaagc
atccctgatctcccagaatccttggcccgcggctgccaatcaagggatccaggctcggat
gtggcaacccacccctcggccttcatcgcatcacccccacacagtgccccagccagccag
ggctccgaccccatgggatgcgattctgactcgggtctcactccctcctccgccctgccc
agactgagctctgactggctccactcggacgacacccagaacaggatggcccacccaacc
agcacccactttgacttcagcccctgcaccctggaccaattgcaggaggaggagcgtgag
agtgacggagttccagagggaggcacacccaaaccagcccggaggatgcagggtttaggc
tgtccagatgtgccgaatgaggacgacctggggaatgagatcgagtgcaagcaggactct
cccaactggcagacgctagtcagccgagaggtcctggcaggcctgacaccacaggagatc
aagagacaggaagtcatcaacgagctgttctacacagagcgagcccacctgaggatgttg
aaggttctggataacgtgttctaccagaaacttacccgagacagcatcctgcctcctgga
gacattaaacacatctttactaacctagaggagattgtccagctacatgtgtcgataaca
gaacaggtgacagtcattcggaagaagaacgagacgtcagtgatagacctgataggagac
gatttactagcttggttcagtgatggcgaggaggagaagatcaagcgggcggtgggcacc
ttctgcagtaaccagcccttcgccctggaactcatcaagacccggcagaagaaggaccag
cgcttcacctcctttatgcaggaggctgagagcaaccgtctgtgtcgcagactccagctg
aaggatatcattccagtggagatgcagaggctgaccaagtatccactgctgctggagagc
atagccaagtacacagaggatgcagcggagagggacaaggtgaagagggccggggagtgc
tgcaggaagatcctcaactatgtcaaccagacagtgaaagaggcagagaacaaacagagg
ttagaggactaccaaagacgcctggacctgtcctcactcaaacagagtgagaacccaatg
atctcagagttcaagagcctggacctgaccaagaggaagatggtgcatgagggacctctc
tcctggaaggtcaacaaagacaagacaatcgagctgtacacgctgctcctggaggacata
ctggtgctgctgcagaagcaggatgagcggttggtcctcaagtgccacagcaagaacctg
gcgggcaccgccgacaccaagcacatctttagccccatcatcaagctcaacactgtgctg
gtgcgctcggtggccaccgacaacaagtccttcttcgtgctgtctatgtccgacaacgga
gcccagatctacgagctaatggcccagaccgtgtccgagcaaagaacgtggcagtgtctg
ataacgcagagggcagacaccatgaagacgaaaccgcacaacatcatacctttacctcag
accgatgctgagcgagacgcagtggaggagatcagcacagggatacccaaactgagcaaa
gacccagaccgcctttccacgggaagtatccagttcgcagaaaaatatgtaacttcctcg
cctggtctgcaacccacgcccacatcgatcaacccattcgacagcatcaaatcagacgac
aaggaagaagagtcgtcgctactgctagacagaagagaagaggaggaggaggaagtggag
gaggtagacgaggaggaagttgaagcgtttctggttggagagctggcagacagactgccc
ttactccaggagaggtcatgccaaggcattgccatcgatgaccaggagccccatgatgcc
ttcgtcatgcccccctccagagccgaggaggccctaagaaccttggcagccctgaggcag
gtccttctcaaccacatgacaagcagagaggagggcagcgacaagaacaatgagaatagg
aaggagaaggagcagagaaagggcttggcccatggcgcccgcctgctgaggatgacgtca
ctgaggggcccagaggacagcaacagcagtacatcgggccctacgagcgcagcagcatct
tctcctggctcctcggagaacggcacggcgggcagggaggagggtgccccaggatcctca
gaactcccgtctggggacacaggcttcttcgagacatctgaggactatggcagttacaat
gtcctggggggctcgggggagagcagcacagacgacgacggtcaggcgagtggcaagggt
ggaggcagggcccagtggggctcggacatcgacctgaagaagctgctctcctcatcctca
cagacaggggatgctggccccaacctcagccgtcaggtcatgactcacatccgcctgctg
caggccaacctgcagcacttgaaggaagtggaaaccaagtataatgaactgcgccaaagg
ctgagtgaaaccgctactgacacagaggagaacaaagatgagagttag
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integrated database retrieval system
