Oncorhynchus kisutch (coho salmon): 109893318
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Entry
109893318 CDS
T09179
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
109893318
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oki04054
]
109893318
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109893318
Pattern recognition receptors [BR:
oki04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
109893318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_19
AAA_22
Motif
Other DBs
NCBI-GeneID:
109893318
NCBI-ProteinID:
XP_031683165
Ensembl:
ENSOKIG00005034405
LinkDB
All DBs
Position
LG6:complement(70121753..70127548)
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AA seq
678 aa
AA seq
DB search
MADFGLYEYQEEVVQRALRGENIIIWLPTGGGKTRAAVYVAKKHLENNPGAKVAVLVNKV
HLVDQHYNKEFNPYLGRDYSLVSISGDCDQKDFFGSEVKNSDLVICTAQILENALTNQEE
GKHVELSQFTLLIIDECHHTHKEGVYNKIMARYVAQKLKGERRLPQILGLTASPGTGGTK
SIKGAVEHVLQICANLDSVIVSSKVYAHELKKKVPRPRKRFDIVDRRPQDPFGDHLKFMM
QFIHDFMALGPDFPVREFGTQEYEADVVILEKKGVTDRNRLLSQCALHLRQYNDALLIND
TVRMVDAFRVLESYYSTKSSTAMDGTDFFLLGLYQENEVELRKLSGDARFENPKMGKLQN
TLLEQFDQGGNSRGILFSKTRKSICCLYDWVSNNPALQRAGIRAAILTGAGNGINYMTQN
EQKDTIRNFRLGSLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARASDSV
YSVVAQAGGREVRRELLNECLEDLTGRAIGEVQRMEPREFQMKITDLQTEALLTRQLAEQ
LKIKKRSRFNAATVQLSCRGCFLPVALGNDIKVIENAHHVNINPDFERYYKTGGQPALKT
FEDWEPGRVISCAACGRQWGMEIIYKKIAMLPILAIENFAMETPEGRKLAKKWKNVEFTV
EEFNFSTYCHNKFPNMLD
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcagactttgggctgtatgagtaccaggaggaggtggttcagagggctctccggggg
gagaacatcatcatctggctgcccaccggaggaggaaagacacgggctgctgtgtatgtg
gccaaaaaacatctggagaataaccctggagctaaggtggctgtgctggtcaacaaggtt
catttggtcgaccaacactacaacaaagagttcaatccctatctgggtcgagactatagc
ctggtgtctatcagtggggactgtgaccagaaggacttctttggtagcgaggtcaagaac
tctgacctggtcatctgtacagcacagatactggagaatgccctgaccaaccaggaggag
ggaaaacatgtcgagctctcacagttcactctgctgatcattgatgagtgccaccacact
cataaggagggtgtctacaataagatcatggcgcgctacgtggcacagaagctgaagggg
gagaggcggctgccgcagatcctgggcctcactgcctctcctgggacagggggaaccaag
agcatcaaaggagctgtggagcatgtgctgcagatttgtgccaacctggactcggtgatt
gtgtcgtctaaagtgtacgcccatgagctgaagaaaaaggtccccagacccaggaaaagg
tttgacatcgttgacagaagacctcaggacccatttggggatcacctgaagttcatgatg
cagtttatccatgactttatggccttagggcctgactttcccgtcagggagtttggcacg
caggagtacgaggcagacgtggtgattctggagaagaagggtgtgacagacaggaacaga
ctgctctcccagtgtgctctccacctgcgtcagtacaacgacgccctgctcatcaacgac
actgtgcgcatggtggatgcctttagggtcctggagtcctactatagtaccaagagctcc
accgccatggatggaaccgacttcttcctgcttggactctaccaggaaaacgaggtggag
ctgaggaaactgtcaggcgatgcccggtttgaaaaccctaaaatggggaagcttcagaac
accctgctggagcagtttgaccagggtgggaactccagagggatcctgttctccaagacc
cgtaaaagcatctgctgcttgtatgactgggtgtccaacaacccagcactgcagcgtgct
ggtatcagagcagccattctgactggcgctggcaatggcatcaattacatgacccagaat
gagcagaaggacacaatccgcaacttccgcctgggctccctcaacctcctgatctccacc
agcgtagccgaggagggcctggacatcccagaatgcaacctggtggtgcgctacgggctg
ctgaccaatgagatcgcacaacagcaggccagtggccgggctcgggcgagtgacagcgtt
tactctgtggtggcccaggcgggggggcgggaggtgcgtcgggaactcctcaatgaatgt
ctggaggacttgactggcagggccatcggcgaagtgcagaggatggagcccagggagttc
caaatgaagatcactgatctccagacagaagcgttgttgaccagacagttggcagagcag
ttgaagatcaagaagaggagtcgtttcaatgctgctacggttcagctctcgtgtcgaggc
tgttttctgcccgtggccttaggcaatgacattaaagtcattgaaaacgcacaccatgtc
aacatcaatcctgactttgagaggtactataagaccggcgggcagcccgcgctgaagact
ttcgaggactgggagccaggccgtgtgatcagctgtgctgcctgtggcaggcaatgggga
atggaaattatatataagaagattgcgatgctgcccattctggccatcgagaactttgcc
atggagactccggagggaagaaaattagccaagaagtggaagaacgttgagtttacagtg
gaggagtttaacttcagcacgtactgtcataacaaattccctaacatgttggattga
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