Oncorhynchus kisutch (coho salmon): 109893473
Help
Entry
109893473 CDS
T09179
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like isoform X1
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
109893473
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oki02000
]
109893473
Transporters [BR:
oki02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
109893473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
109893473
NCBI-ProteinID:
XP_031680845
LinkDB
All DBs
Position
LG1:complement(42213694..42228820)
Genome browser
AA seq
624 aa
AA seq
DB search
MEKHNDPNLRFNTLSQQEMGLVHPVPVPSTQTRGQWSSKLEFLLAVAGQIIGLGNVWRFP
YLCYKNGGGVFFIPYVLFLFTCGIPLFLLETSLGQYTTQGSITCWRKICPLFEGLGYGSQ
VVVLYSSIYYIIILAWAFFYLFSSFSSELPWASCRNSWNTATCMEFDRRVVGHLNWTVAG
NATSPVREFWERRVLSLTDSPNKLGSVRWELALCLLLSWIVCYFCVWKGVKSTGKVVYFT
ATFPYLMLVVLLVRGLTLPGAIDGIKFYLYPDPARLFDPQVWMDAGTQILFSYAICLGCL
TALGSYNKYDNNCYKDCVYLCLLNSGTSFVAGFAIFSVLGFMAYEQGTDISTVAESGPGL
AFIAYPRAVAMMPLPQLWAIFFFIMIILLGLDSEFVGLEALMTAISDMYPSFFLVGHRRK
VLLLIISVGSFFISLVMVTEGGLYIFQLFDYYACSGMTLLLFAILQSVCISWVYGADRLY
DNIEDMIGYRPLPIIKYCLKYFTPVICTATFVFSLIKFTPLKFNNTFQYPWWGSAVGWWF
TLSSTLMVPLWMVYIVSVTPGTLRQRLSILTTPSEDLPMTKAQKNSLLAKQSEQDRPLGD
TEIPAWGHNLLDRDTGPLSQLPSL
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcataatgatcccaatttgaggttcaatacgctttcccagcaggagatgggt
ctggtccatcctgtccctgtgccaagcacccagaccaggggacagtggtcaagcaagctg
gagttcctcctggctgtggccggacagatcataggcttggggaatgtatggaggttccca
tatctgtgctacaaaaatggaggaggggtgttcttcatcccttatgtgctctttctgttc
acctgtggcattccactctttctcctggagacctccttgggccagtacaccacgcagggc
agcatcacctgctggaggaagatctgccccttgtttgaaggactgggttatggtagtcag
gtggtagttctatattccagcatctattacatcatcattctagcctgggccttcttctac
ctcttctcctcattcagctctgagctcccctgggccagttgtagaaacagctggaacaca
gcaacctgcatggagtttgacagaagagtagtgggacatctaaattggacagtagcaggg
aacgcaacatcgccagtgagagagttctgggaaaggagagttttgagtctcacagacagt
ccaaacaagctaggcagtgttcgctgggagctggctctgtgtcttctactgtcatggatt
gtctgttacttctgtgtctggaaaggagtgaagtctactgggaaggtggtctacttcact
gccaccttcccctatctgatgctggtggtgttgctggtccgtggactcacactgccgggg
gcaatagatggtatcaagttctacctctacccagacccagcccgcctctttgacccacag
gtgtggatggatgctggaacacaaatcttgttttcctatgctatctgcctcggctgtctg
actgctcttggcagctacaacaaatatgacaacaactgttacaaggactgtgtgtacctg
tgccttttgaacagtggaaccagctttgtggccggttttgcgatcttctctgttctgggc
ttcatggcttatgaacaagggacagacatctcaacagtggccgaatcaggtcctggcctg
gcattcatcgcctaccctcgtgctgtggccatgatgccattaccacagctttgggccatc
ttcttcttcatcatgataatcctactgggtttagacagtgagtttgtaggtctggaggct
ttgatgacagctatctcagacatgtatccctctttcttcctggttggccatcgtcgtaaa
gtcctcctcctcatcatcagtgtgggtagcttcttcatcagcctggtcatggtcacagag
ggaggcctgtatatcttccagctgtttgattactatgcctgcagtgggatgactctgctt
ctcttcgctatactacagtcagtgtgtatcagctgggtttatggtgcagaccgtctgtat
gataatatagaggacatgatcggttatcgaccattacccatcattaagtactgtttgaag
tatttcactccagtcatctgcacagctacatttgtcttctccttgataaagtttactcca
ctgaagttcaacaacacctttcagtatccttggtggggttccgccgtaggctggtggttc
actctctcctccaccctcatggttcctctatggatggtttacattgtgagcgtcactcct
ggtacactgcgacagagactgtccatcctcaccacgccatcagaggatctccccatgacc
aaggcccagaagaattccctcctggccaagcagtcagagcaggacagacccctgggggac
acggagataccagcctggggccacaacctcctagacagagacactggccccctctctcag
ctaccatccttatag
DBGET
integrated database retrieval system
