Oncorhynchus kisutch (coho salmon): 109893531
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Entry
109893531 CDS
T09179
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109893531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oki03041
]
109893531
03009 Ribosome biogenesis [BR:
oki03009
]
109893531
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109893531
Spliceosome [BR:
oki03041
]
Complex A
U1 snRNP components
U1 related factors
109893531
Complex B
109893531
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
Pre-60S particles
Helicases
109893531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
109893531
NCBI-ProteinID:
XP_020342365
Ensembl:
ENSOKIG00005020487
LinkDB
All DBs
Position
LG6:78337093..78342543
Genome browser
AA seq
616 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGKFGNPGDRLRKKHWNLDELSKFEKNFY
QEHPDVTRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTNM
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEITR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRGG
HSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYGASG
FDKSGNGFGGGYGTNGQSNYGASQAGVFPTQNFQAPQFSANQGGAQSGMSHQQFPFTQQQ
APQPMVPYPMPPQFPQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttctgacagagatcgtggtagagatagaggatatggcagtggaccacct
cgttttggaggcggtggaagaggtggtggtggtggggggaagtttggtaatcccggtgat
cgactgcgcaagaagcactggaaccttgacgaactctctaaatttgaaaagaacttttac
caagagcacccagatgttactcggagatctccgcaagaggttgcacagtacagaagtact
aaagcggttactgtgaagggaagggactgccctaatccaattatgaagttccatgaagcc
agttttccaacctacgtgatggatgtcattaacaaagccggctggtcagaaccaacaccg
atccaagcacagggttggccactggctttgagtggcaaggacatggttggtattgcacag
acgggctctgggaaaactctctcgtacttgttgccagcaatcgtgcacattaatcaccag
cctttcctggaacgtggagatggccctatttgcttagtgcttgccccgacccgtgagctg
gctcagcaggtccagcaggtggcagcagagtatggcagagcttctcgcctgaagtctgtc
tgtgtttatgggggtgcgcccaaagggccacagctccgtgacctggatagaggtgtggag
atttgcattgccacacctggcaggcttattgacttcctggaggcaggaaagacaaacatg
cgcagatgcacttacctggtactggatgaggctgaccgaatgctcgacatgggtttcgaa
ccacaaatccgaaaaattgtggaccaaatcagacctgaccgacagacgctgatgtggagt
gccacttggcccaaagaggtgcgccagctggcagaggacttcctgaaggactacgtccag
attaatgtgggagctctgcagctgagtgccaaccacaacatcttgcagatcgtggatgtt
tgcaatgatggcgagaaagaagacaaactcctccgccttctagaggagatcatgagtgag
aaggagaacaaaaccataatctttacagagaccaagaggagatgtgacgagatcactagg
aggatgaggcgggatggttggccagcaatgggcatccatggagacaagagccagcaggag
agggactgggtgctcaatgagttcaagtttggaaaggcgccaattctcattgccacagat
gtcgcctccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgactacccc
aacaactctgaggactatatccaccgcattggcagaactgcccggagccaaaagactggc
acagcctacaccttcttcacccccaacaacatgaggcaggccagcgacctcgttgctgtg
ctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagaggaggt
cattcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtactcc
tccgggggcaggcgtgacttcagtagctttagggacagggaaaacgatagaggtttcgac
agtggaccaaagaaagtctttggcacaaattcacagagtggaggttatggggcaagtggc
tttgacaaaagcggcaatggttttggcggcggctacggcaccaacggccagtcaaactat
ggtgccagccaggccggggtgttcccaacgcagaacttccaggccccacagtttagtgcc
aaccaaggcggtgcacagagtggcatgagccatcaacagtttcccttcacacagcagcaa
gcaccacagcccatggtgccttacccaatgccccctcaattcccacagtaa
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