Oncorhynchus kisutch (coho salmon): 109893579
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Entry
109893579 CDS
T09179
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like isoform X1
KO
K03267
peptide chain release factor subunit 3
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109893579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109893579
03012 Translation factors [BR:
oki03012
]
109893579
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109893579
Translation factors [BR:
oki03012
]
Eukaryotic type
Release factors
109893579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
PAM2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
109893579
NCBI-ProteinID:
XP_031690754
Ensembl:
ENSOKIG00005036036
LinkDB
All DBs
Position
LG10:complement(68066288..68083719)
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AA seq
579 aa
AA seq
DB search
MDPRDAAPDSWEQEDDVEAPVDGKLDSEFAALNVNAKPFVPNINAVEFVPSFFQKGPSED
PDSGADVEPVVATMGVAETAAPLENGDSEMTTEETWDLKGVEPNEEEPGGGPGGDGGPIV
VEEILEEEVLEEEEDVPIIPKVVALPPDAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGM
VEKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAP
GHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIILVN
KMDDPTVNWSLERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEPVESCTWYT
GLPFIPHLDSLPNLNRASDGPVRLPIVDKYKDMGTVILGKLESGSISKAQQLVMMPNRHT
VEVLSLLSDDVETDDASPGENLKLRLKGIEEEEILPGFILCNAENLCHSGRTFDAQIVII
EHKSIICPGYNAVLHIHTCIEEVQITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTA
GTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVAERD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggacccgagagacgctgcccctgattcctgggaacaagaggatgatgttgaggccccg
gtcgacgggaaactcgattccgaattcgccgccctcaacgtgaatgccaaaccgtttgtc
cccaacataaatgccgtcgaatttgtcccgtccttctttcagaaaggcccctcggaagat
cctgattccggtgcagacgttgaaccagttgttgccaccatgggggtcgcagaaactgca
gccccgttggagaacggcgactctgaaatgaccacagaggagacatgggacctgaaaggg
gtggagcccaatgaggaagaaccaggaggagggcctggtggtgacgggggaccaatagtt
gttgaggagattctggaggaggaagtcctagaggaggaggaagacgtgccaatcatacct
aaagtggtcgccctcccaccagacgcgcccaagaaggaacatgtgaacgtggtgttcatc
ggtcatgttgatgctggcaagtctaccatcggaggacaaatcatgtatttaacaggcatg
gtagagaagagaactctggagaagtatgaaagagaagccaaggagaagaacagggaaacc
tggtacctctcctgggctctggacactaaccaggaggagcgagacaaggggaagactgtg
gaggtgggcagagcgtactttgaaactgagaaaaagcactttaccatcctggacgctcca
ggtcacaaaagctttgtgcccaatatgatcggaggagcgtcgcaggctgacctggctgtg
ctggtgatctcagccaggaagggagagtttgagacaggctttgagaagggtggacagaca
cgggagcacgccatgttggccaaaacggcgggggtgaagcatctgatcatccttgtcaac
aaaatggacgaccccacagtgaactggagcctagagaggtacgaagaatgcaaggaaaaa
ctagtgccatttttgaagaaggttggcttcaaccccaagaaagacattcacttcatgccc
tgctctggcctcacaggagccaacctcaaggagcctgttgagtcgtgcacttggtatacg
gggttaccattcattccacatctggacagtttgccaaacttaaacagagcgagcgacgga
ccagttagattacccattgtagacaaatacaaggacatgggtactgtcatcctggggaaa
ctggagtcagggtccatcagtaaagcacagcagcttgtcatgatgccaaacaggcacaca
gtggaggtgttgagcctgctgagtgatgatgtggagacagacgatgcttctcctggagag
aacctgaagctgagactgaagggcatcgaggaggaggagatcctgccaggcttcatcctc
tgtaacgctgagaacctctgccactctggacgcacctttgacgcccagattgtcatcatt
gaacacaagtctattatctgccctggttacaatgctgtcctccacatccacacctgcatc
gaagaagtgcaaattacggccttaatctgtctggtagacaagaagtcgggagagaaaagt
aagacgcgaccgcgctttgtgaaacaggaccaggtgtgcattgcccgtctgcgcaccgcc
ggaaccatctgccttgaaaccttcaaagacttcccccagatgggacggttcaccctacgg
gatgaaggtaagaccattgccattggtaaggtgttgaagctcgttgctgagagggactga
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