Oncorhynchus kisutch (coho salmon): 109894205
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Entry
109894205 CDS
T09179
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109894205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oki03041
]
109894205
03009 Ribosome biogenesis [BR:
oki03009
]
109894205
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109894205
Spliceosome [BR:
oki03041
]
Complex A
U2 snRNP components
U2 related factors
109894205
Complex B
109894205
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
109894205
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
90S particles
Helicases
109894205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
SRP54
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
109894205
NCBI-ProteinID:
XP_020343086
Ensembl:
ENSOKIG00005030356
LinkDB
All DBs
Position
LG7:13208261..13224176
Genome browser
AA seq
759 aa
AA seq
DB search
MSKRHRLDLGDDYSNKKRSDGKDRDRDRDRDERSKDRDRDRDRDRDRDRDVKPSVQPPNT
MMAGGGMLPLKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILARHQSF
VLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVMLGQE
VGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVL
KEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAI
RTVVQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKVIPLYSTLPPQQ
QQRIFEAAPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESL
LVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKK
LGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVI
ASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFKQ
NHESTQWCYDNFVNYRSLMSADNVRSQLSRIMDRFNLPRRSTEFTSRDYYINIRRALVTG
FFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSDIKPE
WLVKVAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacaccgtttagatttaggagatgactactcaaataaaaagagatctgat
gggaaagaccgagatcgcgacagggaccgtgacgaacgctctaaagacagggaccgcgac
agagatcgggaccgggaccgagatagggatgtgaagccctctgtccagccccccaacacc
atgatggccgggggaggcatgctgcctctcaagcagacagccatgcagcagcagatcaac
ccattcacaaacctgccccacacgccgcgctactatgagatcctgaagaagaggctgcag
ctgcctgtgtgggagtacaaggagcgcttcaacgacatcctggcacgccaccagagcttc
gtgcttgtcggagagacgggctccgggaaaaccacacagatcccccagtggtgtgtggac
atggtgaagggcttgggtggccccaagaaggcagtggcctgtacccagcccaggagggtg
gcagccatgagcgtggcccagagggtggccgacgagatggacgtcatgctgggccaagag
gtgggatattccatacgatttgaggactgcagctccgccaagaccatactgaagtatatg
acagacggtatgttgcttcgggaagccatgaacgaccccctgctggagcggtatggcgtg
atcatcctggatgaggcccacgagagaactctggccacagacatcctaatgggagtcctg
aaggaggtggtccgacagaggtcagacctcaaggtgattgtgatgagcgctacgttagac
gccgggaagttccaagtgtactttgacagctgtccactgctaactattcccggacgcaca
caccctgtggagatcttctacacccctgagccggagcgggactacctggaagccgccatc
cgcacggtcgttcagatccacatgtgtgaggaagaggagggggactgtctgctgttcctc
actggacaagaggaaattgacgaggcctgtaaacggatcaaacgggagatcgacgacttg
ggacctgaagtcggagacatcaaagtcattccactatattccacactgcctccccagcag
caacaaagaatctttgaggccgcaccccccaggaagcccagcggtgcgataggaagaaag
gttgtggtttccacaaacattgctgagacatcccttaccattgacggagtggtgtttgtg
attgatcccggttttgccaagcaaaaggtgtacaaccctcgtatcagggtggagtctctc
ctggtcacggcgatcagcaaagcctcggcgcagcagagggcgggccgcgctggcaggaca
cggccagggaagactttccgtctatacactgagaaagcctacaagaccgagatgcaggac
aacacgtaccctgagattctccggtccaacttgggttctgtcgtgttgcagttgaagaag
ctgggtatcgatgacctggtgcactttgacttcatggacccaccagccccggagaccctg
atgcgggcgctggagctgctcaactacttggcggcgctcaacgacgacggcgacctgaca
gagctgggctccatgatggcagagttcccgttggacccccagctggccaagatggtgatc
gccagctgcgagttcaactgctccaacgagatcctctccatcaccgccatgctgtcagtc
ccgcagtgtttcgtccgccccaccgaggctaagaaggcggcggacgagtccaagatgcgg
ttcgcccacattgacggagaccacctgacgctcctcaacgtctaccacgccttcaaacaa
aaccacgagtctacacagtggtgctacgacaactttgtgaactaccgttcgctgatgtcg
gccgacaacgtgcgctcgcagctgtcccggatcatggaccgcttcaacctgccccggcgc
agcaccgaattcaccagcagagactactacatcaacatccgccgagcgctcgtcacaggc
tttttcatgcaggtggctcatttggagcgcacgggccattacctcacagtcaaggacaac
caggtggtccagctacacccgtctaccgtcctggaccacaagccagagtgggtgctctac
aatgagtttgtcctcaccaccaagaactacattcgcacctgctcggatatcaaaccggaa
tggctggtgaaggttgctcctcagtactacgaaatgggcaacttcccacagtgtgaagcc
aagaggcagttagagcgaattgttgccaaactccagacgaaggagtattcccagtactga
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