Oncorhynchus kisutch (coho salmon): 109894439
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Entry
109894439 CDS
T09179
Symbol
nelfcd
Name
(RefSeq) negative elongation factor C/D isoform X1
KO
K15181
negative elongation factor C/D
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
109894439 (nelfcd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109894439 (nelfcd)
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
NELF complex
109894439 (nelfcd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TH1
DUF4817
Motif
Other DBs
NCBI-GeneID:
109894439
NCBI-ProteinID:
XP_020343526
Ensembl:
ENSOKIG00005004330
LinkDB
All DBs
Position
LG1:complement(39230213..39237992)
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AA seq
579 aa
AA seq
DB search
MDEEYYERNIGDWDGPDGNQDDYVEGENDGKVQEDCLQKFSSRDYIMEPAVFNTLKTYFQ
AGGSPEHVIQLLSENYSAVAQTVNLLAEWLIQMGVEPAQVQERVENHLKSLLIKHFDPQK
ADSIFTVEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSV
STACQQLEVFSRVLRTSLATLLDGGEDNLEKNLPEFAKMVCHGEHTYLFAQAMMSIMSQE
EQGGSAMRRIGQEVQKSAHQRGHDASQITLALGTAAAYPRACQALGAMLSKGALNPADIT
VLFKMFSSMDPPPVELIRVPAFLDLFMQSLFKPGSKINQDHKHKYIHILAYAASVVETWK
KNKRVNINKDELKSTSKAIETVHNLCCNENKGATELVAELSTLYQCIRFPVVAMGVLKWV
DWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLHLLIKLFETEHSQLDVMEQME
LKKTLLDRMVHLLSRGYVLPVVGYIRKCLEKLNTDISLIRYFVTEVLDVIAPPYTSDFVQ
LFLPILENDSIAGTIRTEGEHDPVAEFIAHCKSNFIMMN
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggaatattacgaaaggaatattggagactgggatggtccggatggcaatcag
gacgactatgttgaaggggagaacgatgggaaagttcaggaggactgcctacagaagttc
tccagcagagattacatcatggagcctgctgtcttcaacaccctcaaaacatatttccag
gctggtggctcccctgaacatgtcatccagctcctgtcggagaactactctgctgtggca
cagactgtcaacctgctggcagagtggctcatccagatgggtgtagagcctgctcaggtg
caggagcgggtagagaatcacttgaaaagtctcctgatcaagcactttgacccccagaag
gcagactccatttttactgtagagggagagactcctgcctggctggaacagatgatcgcc
cacaccacctggagagaccttttctacaagctggccgaggcccaccctgactgtctgatg
ctcaacttcactgtcaaactcatctcagatgcgggctaccagggggagatcaccagtgtg
tcgacagcgtgccagcagctggaggtgttctccagggtcctaaggacctctctggccacg
ctgctggatggaggagaggacaacctagagaagaacctgccagaattcgctaagatggtg
tgtcacggggagcacacatacctgtttgcccaggccatgatgtccatcatgtctcaggag
gagcagggggggtcggccatgcgcaggatcggccaggaagtacagaagtctgcacatcaa
cggggccatgatgccagtcagattactctggcattgggcacagcagcagcctaccctcga
gcctgccaggccctgggcgcaatgctgtccaaaggggcactcaaccctgccgacatcact
gtgctcttcaagatgttcagcagcatggacccacctcccgtagagctgatccgagtgcct
gcgttcctcgacctgttcatgcagtcgctgttcaagccgggctcaaagatcaaccaggac
cataaacacaaatacattcacatcctggcctatgctgccagtgtggttgaaacatggaaa
aagaacaagcgagtgaacatcaacaaggacgagcttaaatccacctccaaggccattgag
acggtccataacctgtgttgcaatgagaataaaggagccacagaactggtggctgagctc
agcaccctgtaccagtgcatccggttcccagttgttgccatgggggtactgaagtgggtt
gattggacggtctctgagccccgctacttccagctccagacagaccacacccctgtccac
ctggcgcttctggacgagatcagcacctgtcaccagcttctgcacccacaggtcctccat
ctactgatcaagctctttgagaccgaacactcccagctcgacgtcatggagcagatggaa
ctgaagaagaccctgttggaccgtatggtccacctgctgagtcgaggctacgtgctgcct
gtggtcggatacatccgcaagtgcctggagaagctcaacacagacatctctctcatccgc
tactttgtaacggaggtgttggatgtgattgcccctccatacacttcagactttgtccag
ctgttcctgcccatcctggagaacgacagcatcgctggcacaatacgcacagagggagaa
cacgatcctgtggctgagtttatagctcactgcaaatccaacttcatcatgatgaactga
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