Oncorhynchus kisutch (coho salmon): 109894443
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Entry
109894443 CDS
T09179
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04137
Mitophagy - animal
oki04140
Autophagy - animal
oki04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109894443
04137 Mitophagy - animal
109894443
04148 Efferocytosis
109894443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109894443
Transcription factors [BR:
oki03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
109894443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
109894443
NCBI-ProteinID:
XP_020343528
Ensembl:
ENSOKIG00005041048
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All DBs
Position
LG7:complement(30664602..30686592)
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AA seq
762 aa
AA seq
DB search
MDTGVVPEKKSRVSSDRRKEKSRDAARCRRGKESEVFYELAQELPLPHSVTSNLDKASIM
RLAISYLHMRNLLSTDDEEEQEESEMDSQLNGSYLKAIEGFLMVLSEDGDMIYLSENVNK
CLGLAQIDLTGLSVFEYTHPCDHEELREMLVHRTGTSKKSKEPNTERSFFLRMKCTLTNR
GRTVNVKSATWKVLHCSGHVRVHESPAEQSPGGHKEPSVPYLVLVCDPIPHPSNIEAPLD
TKTFLSRHTLDMKFTYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLMKTHHNLFAKG
QVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNYVLSGIEEEKMMLSLEQTE
DMRPVKKELEEEESSEPEVSPVLLKEEKSPELDVIKLFTRAVETQPLSSLYDRLKEEPEA
LTLLAPAAGDTIISLDFSSPDFPVPADSGILQKEVPLYKDVMLPSTSDKLALPLSLLPPS
DQHLVPNTSVDTTEVSTGPDSSSTPGSHSFTEPDSPLDFCFPMESDISAEFKLDMVERLF
AIDPEPKTPFTLQAMEDLDLEMLAPYIPMDDDFQLRTLSPEQPLSCGPAQPLECSSVHLT
QEVHRYPGSPFNAPGSLAASPALAAPEPADSPCPASLLTKTVPQMDREISLRSLASQNAQ
RKRKMSLSQAVGIGGLLQDHPGPGKKLKVSELSHADAPSNRTILLLPTDLASRLLGISSE
GSGSPFTLPQLTRYDCEVNAPVGGRQLLLQGEELLSALDQVN
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggagttgtccccgaaaagaaaagcagggtgagctcggaccggaggaaggag
aagtcccgggatgcggcgcgatgcaggagggggaaggaatctgaggtgttctacgagctg
gcccaggagctgcccctgccccacagcgtcacctccaacctggacaaggcctccatcatg
agactggccatcagttacttgcacatgaggaatctgctgagcacagacgatgaggaggag
caggaggagagtgaaatggactcccagctgaatggctcctatctgaaggctatagagggc
ttcctcatggtgctgtctgaggatggggacatgatctatctctctgagaatgtcaacaag
tgcttgggtctggcacagattgacctgacaggacttagtgtgtttgagtacacacacccc
tgtgaccatgaggagctgagggagatgctggtacacagaacagggacctctaaaaagtcc
aaggaaccaaacacagaacgcagcttcttcttgcggatgaaatgtaccctcaccaacagg
gggcgcactgtcaatgtcaaatcagccacctggaaggttctccactgctcaggccatgtg
cgggtccatgaatccccagctgagcagagccccggtgggcacaaggagccgtccgtcccc
tacctggtgctggtctgtgaccccatcccccacccctccaacatcgaggcgccactggac
accaagactttcctcagccgccacacactggacatgaagttcacctactgtgatgagagg
atcactgagctgatgggctatgatccagaggacctgttaaatcgctctgtgtatgagtac
taccacgccctggactcagaccacctcatgaagacccatcacaacttgtttgcgaagggc
caggtgagcacaggccagtaccgcatgctggctaagagaggaggctttgtgtgggtggag
actcaggccactgttatctacaacaacaagaactcccagccccagtgtgttgtgtgtgtc
aactatgtgctcagtggcattgaggaggagaagatgatgctgtctctggagcagacggag
gatatgaggcctgtgaagaaggagctggaggaggaggagagctctgagccagaggtgtcc
cctgtgctcctgaaggaggagaagagcccagagctggatgtgatcaagctgttcacccgg
gcggtggagacccagcccctgtccagcctgtatgaccgactgaaggaggaaccagaggcc
ctcaccctactggccccggccgctggagacaccatcatctccctggacttcagcagcccc
gactttcctgtccctgcagactctggcatcctgcagaaggaggtgcctctctacaaggat
gtgatgctgccctccaccagtgacaagctggccctgccactctctctgctgccccccagt
gatcagcacctggtccccaacacctcagtggacaccactgaggtgtccactggtccagac
tcctccagcaccccaggcagccacagcttcactgagcctgacagcccattggacttctgt
ttcccaatggagtctgacatcagtgctgagtttaaactggacatggtggaaagactgttt
gccatcgacccagagccaaagactcctttcaccttacaggccatggaggacctggacctg
gagatgttggctccgtacatccccatggatgatgacttccagctgcgcaccctatccccc
gagcagcctctgtcttgtggcccagcccaacccctagagtgctcttctgtgcacctcacc
caggaggtccaccgctaccctggctcccccttcaatgccccaggcagcctggcagcttcc
ccagccctagcagccccggagccagcagatagcccttgccctgcttccttactcaccaag
acggtgcctcagatggacagggagatctcccttaggtcactggcctcccagaatgcacag
cgcaagaggaagatgtctctgtctcaggctgttggaatagggggattactccaggaccat
cctggtccaggtaaaaagctcaaagtgtctgagctgagccacgctgatgctccctccaac
aggaccatactgctcctgcctacagacctggcaagccgtctgcttggcatctcatcggag
ggcagcggctcacccttcacccttcctcagctgacccgatatgattgtgaggtcaacgcc
cccgtggggggtcgccagctcctgctgcagggcgaggagctcctgagtgccctggaccaa
gtcaactga
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