Oncorhynchus kisutch (coho salmon): 109894590
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Entry
109894590 CDS
T09179
Name
(RefSeq) polyadenylate-binding protein 4-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109894590
09123 Folding, sorting and degradation
03018 RNA degradation
109894590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109894590
03041 Spliceosome [BR:
oki03041
]
109894590
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109894590
mRNA cycle factors
Stress granule specific factors
109894590
Spliceosome [BR:
oki03041
]
Complex C
Other components
Complex C specific factors
109894590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
RRM_7
OB_RNB
ApbA_C
Motif
Other DBs
NCBI-GeneID:
109894590
NCBI-ProteinID:
XP_020343779
Ensembl:
ENSOKIG00005022837
LinkDB
All DBs
Position
LG7:37182927..37197705
Genome browser
AA seq
654 aa
AA seq
DB search
MLFPRSLFPQPQNNQMNTANEGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCR
DMITRRSLGYAYVNFSQPTDAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIK
NLDKTIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADRAIEKMNGMLLN
DRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDDKLKEMFDQYGKTLSVRVMA
DPSGKSRGFGFVSYEKHEDANMACEEMNGLEFNGKTVFVGRAQKKMERQAELRRKFEMLK
QERISRYQGVNLYIKNLDDTIDDEKLRKEFTPFGSITSAKVMLDEGRSKGFGFVCFSSPE
EATKAVTEMNGRIVGSKPIYVALAQRKEERKAHLTNQYVQRIAGMRAMPANANINQFQPA
SGYFMPAVPQAQNRTTYYAPNQLAQMRHNPCWQQQGGRGQGGFQGMPNSLRQPGPRANPR
HLTPNASAQSPRSMGPSGAQRIGIVGQAMGPHPSMGVPAPRAMTSYKYTTNVRNTNPQVV
HPIASQQSQQAVDVQGQEPLTASVLAAAPPQEQKQMLGERLFPLIQPMHPSLAGKITGML
LEIDNSELLHMLESNESLRSKVEEAVAVLQAHQAKKDATQKVGVITTTAAATTS
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgcttttcccacgcagtctctttccccagccacaaaacaaccaaatgaacacagcgaat
gaggggagttatccaatggcttctctatatgttggcgacctgcaccctgatatcactgaa
gctatgctgtatgagaaattcagcccagctggaccagtgctgtctattcgagtatgtcgt
gatatgatcacccgacgctctctgggttatgcctatgtgaatttctcgcaacccacggac
gccgagagagccctggacaccatgaactttgatgtagtgaaagggaagccaatcagaatc
atgtggtcacagcgagatccctcactcaggaagtctggggtgggcaacgtgttcatcaag
aacctggacaagaccattgataacaaggccctctatgacaccttctctgcctttgggaac
atcctgtcttgcaaagttgtatgtgatgagaatggatccaagggatacgcgtttgtgcac
ttcgaaacgcaggaggcagctgaccgcgccatcgagaagatgaacggcatgcttctgaac
gatcgcaaggtgttcgttggacgattcaagtctcggaaggagagggaggcagaactgggg
gccaaagcaaaggagttcaccaacgtctacatcaagaactttggagacgacatgaatgat
gacaagctaaaggaaatgtttgaccaatacggtaaaactctcagtgtgagggttatggct
gaccccagtggcaaatccagaggttttggctttgtgagttacgagaaacacgaggacgct
aacatggcatgtgaggagatgaacggtctagagttcaacgggaagaccgtcttcgtgggg
cgtgctcagaagaagatggaacggcaggcagagctaaggagaaagtttgagatgttgaaa
caggagaggatcagccgttaccagggcgttaacctttacattaaaaacttggacgacacc
attgacgacgagaaactgcgaaaggagtttaccccattcgggtccatcaccagtgccaag
gtgatgctggacgaggggcggtccaagggctttgggttcgtctgcttctcctctcctgag
gaggccaccaaggctgtgactgagatgaatgggcgcatcgtgggctccaagccaatctac
gtggccttggctcagcgcaaagaagagcgcaaagcccacctcactaaccagtatgtgcag
cgcatcgctggcatgagggccatgccagccaacgccaacatcaaccagttccagcccgcc
agcggatacttcatgcctgcagtgccacaggcccagaacaggaccacctactatgcaccc
aatcagctggcccagatgaggcacaacccctgctggcagcagcagggtggcagaggccaa
ggtgggttccagggaatgcccaactccctgcgccagcctggtccacgtgccaacccgaga
cacctgactcccaatgccagcgcccagagcccccgaagcatggggccttctggagctcag
agaattggaattgttggccaggccatgggtcctcatccctccatgggagtccctgcccct
cgggccatgacatcctacaagtacaccacaaacgtacgcaacactaacccccaggtggtg
caccccatcgcctcacagcagtctcaacaagctgtagatgtgcagggtcaggagcctctc
acagcctctgtgctggctgctgcaccgcctcaggagcagaagcagatgctaggggagcgc
ctgttccccctgatccagcccatgcaccccagcttggcagggaagatcactggaatgctg
cttgagatcgacaactctgagctgctgcacatgctggagtccaacgaatccttgcgctcc
aaggtggaggaggctgttgccgtgctccaggcccaccaggcaaagaaggatgccacacag
aaagtgggagtcatcactacaaccgctgctgccactacctcctga
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