Oncorhynchus kisutch (coho salmon): 109894598
Help
Entry
109894598 CDS
T09179
Name
(RefSeq) SR-related and CTD-associated factor 8-like isoform X1
KO
K13191
RNA-binding protein 16
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109894598
03041 Spliceosome [BR:
oki03041
]
109894598
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109894598
Spliceosome [BR:
oki03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
109894598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
CDC45
DUF3525
Motif
Other DBs
NCBI-GeneID:
109894598
NCBI-ProteinID:
XP_020343789
LinkDB
All DBs
Position
LG7:38236847..38276974
Genome browser
AA seq
1476 aa
AA seq
DB search
MEAVKAFNDELYSLNEYKPPISKAKMTNITKSAIKAIKYYKHVVQSVEKFVQKCKQEYKV
PGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDAPVNNATPGTPATPATPANIVSSLPDWAS
QFSNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAASANPMHLNPLDQRVSSFNKKMLGHFDFGNDSERSEESKKDSQSSQMPMVSDSIFHQ
LAEQLQQQNLEQLQKQLMEHQQHQQKDGIFGSENTPQQSSSQSQHPEPDNKIDDSIENQQ
QDMDMDLDDGPEMDEEIFEPEDKKSKTIDIQSRTRSRSRSRSPRKRRSRSRSGSRKRKHR
KRSRSRSRERKRKLSRSYSSERHARELEKERQKKGLPPIRSKFLSVCSTTLWVGQVDKKA
TPQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYQARQKLSTGSHKIVSKVIKIAW
ALNKGVKQEYKQLWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAEWEAAKNAPEP
VKEAVSQAVSAEPMAATNSQQTQQKAFIQQVSMMPVQHPVAQAVPAGGLVPPSFPVSMTM
PPPGYGPPPTFLRAGFNASQPPPGFMQAASVPQQAGMGSAPISLVQPSMSQAQDSMKDSP
YGAAVPGSFMPSAIPGQGVFNPLQPGVQTQQGANDKTGQSADGMDAAAELVLQGMQNAMS
RRMGLLGMHPSASLTHPLQQQGLPGQRMPGLMPLDLRPSMLQGAGARFPLLMQQGLSQQS
ILDASLHAQARARAASQMDHFNRAEGAFNRGPNPPNENMSKAEDQPSSRADESQQGRDQD
YRFPPPQEKQSTGLLRTPPPEHRESMGGGGRGGGAGGGGMGGGGGRPALLQTPVREPARD
SVVGRLQALAGFTPQTQSRWGPPRGDFDERDMRGSPAGVSKGFQEEHPGSNQGQNFPNRF
ENQNRAGAGGVGAGGPGGGGVGGGPAWSRGGAAAPFADADMPQDLDERRRAWDRQQRERD
DREFDLRKEMNGNRRERDSREKDRERERERDRERERDHGRERGNREREQECDREREREKE
REKDRERERERDRNKRGAWTPLLPLPQPLLPTPALTPTLSLTQGKSQALLQLQSRLQPKP
GFLTKPGLLQTPILLTRSTSQAPTKFLQAPSQSPTQAKNEALPRPEPQTESQSSTQAHAS
PKSESSPQTQSSPQNQSSPQNLVSPQTQLPSPPQAQSSPWAQLPPQALSPPRAQTPPQAL
SPPPAQSPPQALSAPPAQSPPPAQLPPQAPSPHQEIADTQEEPEKLQEEPMEEPEPIEEP
PSQLVYGTGLRMDIDVVAEPTPERAPTPTLSPTPAPLSMSPVLTHRSEEPQCLPESLDVQ
QPPQHASSSPKDNGLSEPMEEAEKQPVVEQTDTEGT
NT seq
4431 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagtcaaagcattcaacgacgagctctactctctgaatgagtacaagcctccg
atctccaaggccaagatgaccaatattaccaagtctgcaataaaagctataaaatactac
aaacatgttgtccagagcgtggagaagtttgttcagaaatgcaagcaagagtacaaggtc
ccaggcctgtacgtcatggactccatcgtgcggcagtcacgacaccagtttggccaggac
aaggatgtgttcgccccgcgcttcagcaaaaacattatcggaaccttccagcacctctac
cgctgcccctcagatgacaagagtaagattgtcagagtcctcaacctgtggcagaagaac
gccgtcttcaagagtgacatcatccagccgctgctggacatggctgcaggactaccccct
cccagtgtcacccctgtcatgaccagcagggatgctccggtcaacaacgctacgcctggt
accccagcgaccccggccactccagccaacatcgtgtccagtctgcctgactgggcgtct
cagttttccaacacagacactgtagctgctgtggcccagatcctgcagagtccacaggga
caacagctccagcagctggtgcagagtctgcagatgcagcagcagaagccacagccgtct
ctgctgcaggcgctggatgcaggcctggtggtccagctgcaggccctgacggcccagctc
actgctgccgcctcagccaaccccatgcacctcaaccccctggaccagagggtttcctcc
ttcaacaagaaaatgttgggtcattttgactttgggaatgattcagaacgctctgaagaa
tccaaaaaggactcacaatcatcccagatgcccatggtgtctgactccatcttccaccag
ctggcagagcagctgcagcagcagaacctagagcagttacagaagcagctcatggagcac
cagcagcaccagcagaaggatggaatctttgggtctgagaacacaccccagcagagcagc
agtcaatcacagcacccggagccagacaacaagattgatgactccattgaaaaccagcag
caggacatggacatggacctggatgacgggccagagatggacgaagagatcttcgagcca
gaggacaagaagtccaagacgattgacatacagtcaagaacacggtccaggtcacgatcg
agatctcccaggaagagacggtccagatcacggtcaggctctcggaaacggaaacatcgc
aagcgatcgcggtcacgctccagagaacggaagaggaagttgtcgcggtcctactccagc
gagagacatgcccgcgagctagagaaagagcgtcagaagaaaggactgcctccaatccga
tccaagtttctcagtgtgtgcagcaccactctgtgggtgggacaggtagacaagaaggcc
actccgcaggacctcaccaatctgtttgaagagtttggtcagattgagtctatcaatatg
atccctccccgtggctgtgcctacatctgtatggtccacagacaggatgcttaccaggcc
agacagaaactcagcactggttcacacaagatcgtctccaaggtcattaagatcgcttgg
gcgctgaataagggagtgaagcaggagtataagcagttgtgggacatggacctgggggtc
acctacatcccctgggagaaggtcaagctggacgacctggacggcttcgctgagggaggc
atgatcgaccaggagactgtcaacgccgagtgggaagcagccaaaaatgcaccagagcca
gtgaaggaagcggtgagccaggctgttagcgctgaacccatggcagccactaattcccaa
cagacccaacaaaaggccttcatccaacaagtctccatgatgcctgtgcagcaccctgtg
gcccaggctgtccctgctgggggtcttgtgcctccatccttccctgtttccatgacaatg
cccccgccaggctatggccccccgcccaccttcctcagagcagggttcaacgcctcccag
cctcctccaggtttcatgcaggcagcaagtgttcctcagcaagcaggcatgggctcagct
cctatatctctggtgcagccctccatgtcgcaggctcaggacagcatgaaggactccccg
tacggagccgctgtcccaggaagcttcatgccctctgccatccctggacaaggggtcttc
aacccacttcaacctggagtccagacgcagcaaggagccaatgacaagacgggccaatct
gctgatggcatggacgctgctgcagagttagtactgcaaggtatgcaaaatgcaatgagt
cgtcgtatgggtcttctggggatgcacccctcagcctccctcacccaccccctacaacag
cagggcctgcctggccagaggatgcctgggctaatgccgctggacctccggcctagtatg
ctccagggagccggggcccgcttccccctcctgatgcagcagggcctgtcccaacagagt
atcctggatgcctccctccatgcacaggcccgcgccagagcggcctcccagatggaccac
ttcaacagggccgaaggggccttcaaccggggtcccaaccccccaaatgaaaacatgtct
aaggctgaagaccagccttcctctcgggcagacgagagccagcaggggagggaccaagac
taccgcttccccccgccccaggagaagcagagcacaggcctgctgaggacacctcccccg
gagcacagagagtccatgggtggaggtggacgtggtgggggagctggtggtgggggtatg
ggcggaggaggaggcagacctgccctgctgcagaccccagtgagggagccagctagagac
agcgtggtagggcggcttcaggccctcgccggcttcaccccccagacccagagtcgctgg
gggccacctagaggggactttgatgagcgtgacatgcggggctcaccagccggggtctcc
aagggcttccaggaggagcaccctggctccaaccaggggcagaactttcccaaccgcttt
gagaaccagaaccgcgctggggcaggaggagtaggtgctggtggtcctggtggcgggggt
gttggagggggcccggcgtggagtcgtggtggagctgcagcaccgttcgctgatgctgac
atgccacaggacttggatgagcgccggcgcgcttgggacaggcagcaacgggagagggac
gacagggaatttgacttaaggaaggagatgaacggcaaccgccgtgagagagatagccgc
gagaaagaccgggagagggagagagagagggaccgggagagagaaagggaccatggccgt
gagcgtggcaaccgtgaacgagagcaggagtgcgaccgggagagagagcgtgaaaaggag
agggagaaggatcgggagagagaacgtgagcgggaccgtaacaagcgtggagcctggaca
cctcttctccctctaccacaacccctacttcctactcctgccctgaccccaaccctctcc
ctgacccaaggcaaatctcaggccctgctgcaactacagtccaggcttcaacctaaacct
ggattcctaactaaaccaggtctgcttcaaactccaatcctcctaactcggtcaacatct
caagccccaaccaagttccttcaagccccatcccagtctccaactcaagccaagaatgaa
gccctccccaggcctgagccccagacagagtcccagtcctctacccaggcccatgcttcc
cctaagtctgagtcctcaccccagacccaatcctctcctcagaaccagtcatcaccccaa
aacctggtttcccctcagacccaattgccgtcccctccccaggcccagtcctcgccatgg
gcacagctcccaccacaggccctgtccccaccacgggctcaaacgccaccacaggccctg
tccccaccaccggcacagtcgcctccccaggccctgtccgcaccacctgcacagtcgcca
ccaccggcacagttgccaccccaggccccgtcgccacaccaggagatcgctgacacccag
gaagagccagagaaactccaggaagaacccatggaagagcctgaacccatagaggaacct
ccatctcagttggtctatgggacggggttgaggatggacattgacgtagtggctgagccc
acacctgaacgggctcccacccctaccctctcccccactccagccccactctcaatgtca
cctgtcctcacacaccgctctgaggaaccccaatgcctgccggaatccctggacgtgcag
caaccaccacagcatgcctcctcctcccctaaggacaatggactgagtgagccgatggag
gaagctgagaaacagccagtggtagagcaaactgacactgaggggacataa
DBGET
integrated database retrieval system
