Oncorhynchus kisutch (coho salmon): 109895210
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Entry
109895210 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: dmX-like protein 2
KO
K24155
rabconnectin-3a
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
109895210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109895210
Membrane trafficking [BR:
oki04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
109895210
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
109895210
RAVE complex
109895210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML_2
Beta-prop_IFT140_1st
EIF3I
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF12
Beta-prop_LRRK2
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
109895210
NCBI-ProteinID:
XP_031672498
Ensembl:
ENSOKIG00005021937
LinkDB
All DBs
Position
Unknown
AA seq
3085 aa
AA seq
DB search
MHLHQVLTGAVNPGDCCYSVGSVNDIPFTAYGSGCDIVILASDFECVQIIPGAQNGNIQV
GCVECSHQLGRIAASYGNTVCIFEPFATNPNKRHKQLNYQWRKTGQFFLNAITYNLAWDP
QGNRILAATEHLQLWAPPSADTLIEEEDGPVTDEKPHPALNDWKCVWQCKTAMSVHITKW
SPDGEYFATAGKDDCLLKVWYPTTGWRSAVVLPDLPDKKGPQVHFSFIYLAHPRSVTGLS
WRKTSKYMPKGSVCNVLLTSCEDGVCRLWSETVLPEDSILGGQITENTYSSSLPGLGGKD
KIQHALESMSHLKHLRRGRRRSSALVSHTELLPSQMGTHETHTHRHISHHANALCHFHIS
ASINPATDIPAVLAESAVFTPEDGSGGGGFVVHWLNNKDLSFTTSMDLFMLQLRKLSEQQ
LDQATDDALDQNGSPIKFDFDLDEMSEKGSSEHEEGEGGEGSTKASSPGSSSSVPLPSML
LERKMEALTLEWNKSPDMLFTIHPTDGSFLVWHVKYLDEYIQGIFRQVQVSFSSRIPVAF
PTGDANSLSKNILMYACSFSNVDSSNAGGEQGTRARRLPRSASAGLGSSALSLSLGQAPG
IGPAVMMVSKHVDGSLNQWAVTFAERSAFSNVLTVSHTFRYCGHRFHLNDQACHTVLPLL
LTSSHHNALLTPPSAPGSIDLDQPPTHTPPPRGRRRKQLRNAATRTFHDPNAIYSELILW
RVDHIGPLSCTGGVSELARINSLHTSAFSNVAWLPTLVPSSVLGTYCNSSSACFVASDGK
NLRLYQAVVDARKLLDELSDPETSKLVGEVFNIVSQQSTARPGCIIELDVITNQCGSTTQ
LLHVFQEDFILGYTPQEDPELYTTSYPSLEEYHPTPFSEKFFLVVIEKDLNMNSVLQMWH
LHLQSVQACVDDPVPERSYQSQLTIPFQQSTADTSPSPLPRSASTANLQSASKLILSSKL
VCSHRLDLPVGVEVTRATPSAGHLSSSSIYPVCLAPYLIVTTCSDSRVRFWRCSVEGGET
TLGCEEGENRIYHWEPWALLNEEEDNNSAVCVPGRPVAVSCSYTGRLAVSFKQPRPGHIP
GQGHGPAGDFSMHVSIFECESTGGSEWVLEQTLHLDDFTRPSSTLDPRVSVDSNLFVYSR
SDLYMSRDHHSPNIKHYVHLDWLSKEDGSHILTVGVGSNILMYGRISGVVNEQTSSKDGV
AIITLPLGGSIKQGIRSRWILLRTVDLLSSVDGTPSLPVSLSWVRDGILVVGMDCEMHVY
AQWRQDRKPGEAEGDSLSSEDNIAGGVGGGGVQTATNATTGGSSLAFKGRPRSKSVFEGN
VAIDEALQAPAGLQEGGLFEAAHSLSPTLPQYHPTQLLELMDLGKVRRAKAILSHLVKCI
AGEVAVVRDVEAGEGGTRRHLSRTISVSGSTAKDTIVAGRDGGRDYTEINSIPPLPLYAL
LSADLDTSYKGGEEGAKGGKVSEVEGARKTGGDQYTDLFQLQAVTTDDFVSFATEKVEKK
SRFINLSQYGPTYFGPEHAQVLSSQLMHSSLPGLTRLEQMFLVALADTVATTSSEVSSST
DKQYTGGEALDECGLRYLLAMRLHTCLLTSLPPLYRMQLLHQGLSTCHFAWAFHSEAEEE
MLNMIPAMQRGDPQWSELRAVGVGWWIRNINTLRRMVEKVGKAAFQRNNDPLDAALFYLA
MKKKAVLWGLFRSQRDEKMTVFFKNNFSEDRWRKAALKNAFSLLGKQRFEQAAAFFLLAG
SLKDAIEVCLEKMEDIQLAMVVARLYEADYESSSTCQAILYEKVLGCQRDGSGYHCTKLH
PDPFLRSIAFWIMKDYTKALDTLLECIPKEDDENPDVMVKSCNPVVFSFYNYLRTHPLII
RRHYASPEGAVTSSLGLTSEKSSVDEINLIERKLFFTTANAHFKVGCPVLALEVLSKIPK
VTKKSVSSSPLSKGSSMANVSSSLPLENGNQGALDWASPAPVKANPAWGTEESSATLDWS
QPLVKVEDDGLQLDWGDDKNDEDDTDGGLTMKKTDVETKADEGSGGVRPPGLQREDSQGE
SEVDVIAEQLKFRACLKILMTELRTLATGYEVDGGKLRFQLYSWLEKEIGAMHRICNYKV
TGKEESQELERWDDGGVEDVFEESLGGGGGTEAGAYERHQLGRRRLAAKQLHAERRKAWL
RKNQALLRVFLSYCSLHGAKGGGVTSVRMELIFLLQESQQETTVKQLQSPLPLPTTLPLL
SASIATTKTVISNPVLHLSNHIHDILHTITQMELPPHPDLMDDRVNLLHTLAASLSACIY
QALCDSHSYSSQAEANQFTGMVYQGLLLSERRRLRTESIEEHATPTSAPAQWPGVSSLIA
LVQSAQGEDQPKLNVLLCEAVVAVYLSLLIHGLGMHAGNELFRLAAHPLSNKMWAAVFGG
GAKIIIKPKRNVEITPAAAAGKARTDSSSSVTPEPDSGTKAKPAVPAPPPAEDVDRLRRR
FNMRMLVPGRPVKEVPATPPPVPAERPAYREKFIPPELSMWDYFVAKPFLPLSDSGALYD
SDESGEEDDDDDDDDAFLSDTQMTEHSDPNSYSWSLIRLVMVKLALHNVKTFLPLTGLDF
TDLPVTSPLGNAVLKTLENWETQLQERMNKFDGPPPNYINTYPTDLSTGGGPAILRHKAM
LEPDNTPFKNKNHISFPARRLWHYLVKQEVLQETLIRYIFTKKRKQSEVEGDLGYPGRNA
KIIHKESDIIMAFAINRANTNEIVLASTHDVQEVDVSTLLAAQPYTWIGEDFDKESHSSD
DVDYRSSHTNVAQASSTPSHFNPKDMAASASMPWLGSGQTSMGASVIMKRNLNNVKRMTS
HPIFQYYMTGAQDGSVRMFEWNRPQQLICFRQAGNARVTRLYFNSQGNKCGVSDGEGFLS
LWQVNQTSSNPKPYVSWQCHSKTCGDFAFITXSSLIATAGQSNDSRNVCLWDTLISPSNA
MVHAFPCHENGATVLQYAPKQQLLISGGRKGFVCVFDIRQRQLLHTFQAHDSAVKALALD
TSEDFFVTGSAEGNMKVWKLAGHGLMHSFSTEHAKQSIFRNIGAGVMQVETRPGNRIFTC
GADGTLKMRVLPDRYNIPSSIFDIL
NT seq
9258 nt
NT seq
+upstream
nt +downstream
nt
atgcatctccaccaggtgctaacgggagctgtgaaccccggtgactgctgctattctgtg
gggagcgtcaacgacattcctttcacggcctatggttcaggctgtgatatagtgatcttg
gccagtgattttgagtgtgttcagatcatccctggggctcaaaatggcaacatccaggtg
ggctgtgtcgagtgctcccaccaactgggcaggattgcagcgtcctatgggaacacagtg
tgtatctttgaaccattcgctaccaacccaaacaaacgccacaagcagcttaactaccag
tggagaaagacaggacagttcttcctaaatgctatcacctataacctggcctgggaccca
caagggaaccgtattctggcagctacagagcacctgcagctgtgggcccctccgtcagca
gacacactgatagaggaggaggatggacccgtgaccgatgaaaaacctcaccctgccctc
aacgactggaagtgtgtttggcagtgcaagactgctatgtctgttcacatcaccaagtgg
tctcctgatggggaatactttgcaacagccggcaaggatgactgtctgttgaaggtgtgg
taccccaccactgggtggcgctctgctgtggtgctcccagacctcccagataagaaaggc
cctcaggtccacttctcctttatatacctggcccacccccgctctgtcaccggcctgtct
tggaggaagaccagcaaatacatgcccaagggtagtgtgtgtaatgtgttgttgacgtcg
tgtgaggacggtgtgtgtaggttgtggtctgagacggtgctgccagaggacagtatcctg
ggtggtcagatcactgagaacacatacagctccagcctgccaggcctggggggcaaggac
aagatacaacacgccctggagtcgatgagccacctgaagcacctgcgtcgtggtcgtcgg
aggtcgtctgctctggtgtctcacactgagttgctgccgtctcagatggggacccacgag
acacacacacaccgccacatctctcaccacgctaacgctctctgtcatttccacatctct
gccagcatcaaccctgccacggacatcccagcggtgctagcggagtctgctgtgtttact
ccggaggacgggagtggaggaggagggtttgtggtccactggctcaacaacaaggacctg
tccttcaccacctccatggacctgttcatgctgcagctccgcaagctctcagaacagcag
ctggaccaagccaccgacgacgccctcgaccagaatggctcccccattaagtttgacttt
gacctagatgagatgtcagagaagggttcatcagagcatgaggagggtgagggtggtgaa
ggcagcaccaaggcgtcgtccccaggctccagtagctcagtgcccctgccctccatgttg
ctggagaggaagatggaggcgttaactctggagtggaataagagtcctgacatgctgttt
accatccaccccaccgacgggtccttcctggtctggcacgtcaaatacctggacgagtac
atccaggggatcttcagacaggtgcaggtgtcgttctcgtcccgtatcccggtggcattc
cctacaggcgacgccaactccctgagtaagaacattctgatgtacgcctgctccttctcc
aacgtggatagctccaacgccgggggagagcaggggacgagggcccgccgtctgccccgt
tctgcctctgctgggctgggttcctcagccctcagcctctctctgggccaagctccaggc
atcggccctgctgtcatgatggtgtccaaacatgtggacgggtctctcaatcagtgggcg
gtgacgttcgctgagcgctcggcgttctccaacgttctaactgtgtctcatacgttccgt
tactgcggtcaccggttccacctcaacgaccaggcgtgtcacaccgtcctccccctactg
ctgacctcctcccaccacaacgctctcctcacccccccctccgcccccggcagcatcgac
ctcgaccagccacccacacacacacctccccccagaggacggcgcaggaagcagctgcgt
aacgcggccaccaggacgttccatgacccgaacgccatctacagtgagctgattctgtgg
agggtggaccacataggacccctgtcctgcactggaggagtgtcagagctggcccgaatc
aactccctgcacacatcagccttctccaatgtagcatggctgcctacccttgtacccagc
tctgtgctaggtacatactgtaacagttccagtgcgtgcttcgtagcgtcagatggtaag
aacttgcgtctctaccaggctgtggtggacgccaggaaactactggacgaactgtcagac
cctgagacctcaaaactagtaggagaggtatttaacatagtgagccagcagtcgacagcc
agaccaggctgcatcatagaactagatgtcatcactaaccagtgtggatctaccacccag
ctccttcatgttttccaggaggactttattttggggtatacacctcaggaggacccagag
ctctacactacatcctacccttctctcgaggagtaccatcctactccgttctctgagaag
ttcttcctggttgtcatagagaaggacctgaacatgaactctgtgctgcagatgtggcac
ctgcacctccagtccgtacaggcctgtgtggatgatccggtcccagagcggtcttaccag
tctcagctgacgatcccgttccaacagagtacagctgacacgtccccctcccctctccct
cgctcagcctccacagccaacctgcagtcagccagcaaactgatcctcagctccaagctg
gtctgtagccaccgcctggacctgcctgttggggtggaggtgaccagggctacgccctcc
gcaggtcacctgagttcgtcgtccatctaccctgtgtgtctggccccctacctgatcgtc
accacctgctctgactcccgcgtccgtttctggcgctgttctgtggaggggggagagaca
accctgggctgtgaggagggggagaacaggatctatcactgggagccttgggctctactc
aacgaggaggaggataacaacagtgctgtgtgtgtcccgggacgtcctgtagccgtgtcc
tgttcctacactggacgactggctgtctccttcaaacagccccggcctggacacatcccg
ggacagggccatggtccagcaggggacttctccatgcacgtgtccatctttgagtgtgag
tctacgggggggtctgagtgggtgttggagcagactctccatctggatgacttcactagg
ccctcctctactctggaccccagagtcagtgtagactccaacctctttgtgtacagcagg
tctgacctgtacatgagtcgcgaccaccactctcccaacatcaaacactatgtccacctg
gactggctgtccaaagaggatgggtctcatatcctcacggtgggggtgggatccaatatc
ctcatgtacggtcgcatctcgggcgttgtcaacgaacagacttcaagcaaggacggggtg
gcgatcatcaccctacctctagggggcagcatcaaacagggtatccgttcacgctggatc
ctgctgcgcactgtggacctgctctcctctgtagacggcaccccctccctgcccgtgtcc
ctgtcctgggtgagggacggcatcctggtggtgggtatggactgtgagatgcacgtgtac
gcccagtggcgccaggaccgcaagcccggcgaggccgagggggacagcctctcctctgaa
gataacatcgccgggggggttggagggggcggagtgcagacggccaccaatgcaaccacg
gggggatcctcgttggcgttcaaggggcgcccccggtccaagagtgtgtttgagggcaac
gtggcaatcgacgaggctctccaggcgccggcagggctgcaggaggggggtctgttcgag
gcagcccactccctgtcccccaccctgcctcagtaccatccaacacagctgctggagctc
atggacctggggaaggtccgccgcgccaaggccatcctgtcccacctggtgaaatgtatc
gctggggaggttgctgtggtgagggacgtggaggcaggtgagggtggaaccagacgccac
ctgtcccggacaatcagtgtgagcggcagtacggctaaagacaccatcgtggccggccgc
gacgggggacgagattacacagaaatcaactccattccccctctacccctctacgctctg
ctctctgctgacctggacacctcctataagggaggagaggagggggcgaagggaggcaag
gtgtctgaggtagagggggcgaggaagacaggaggagatcagtacacagacctgttccag
ttgcaggctgtgacgacggatgactttgtgagcttcgctacagagaaagtagagaagaag
tctagattcatcaacctgtctcagtacggacccacctacttcggaccagaacacgcacag
gtgttatctagtcagctgatgcattccagtcttccaggtctgaccaggttggaacagatg
tttctggtggctctagctgatactgtagctaccaccagttcagaggtcagcagctccact
gacaaacagtacacaggtggtgaggccctggatgagtgtgggttgaggtacctgttagcc
atgcgtctacacacctgtctcctcacctctctacccccactgtaccgcatgcagttgctg
caccaaggtctgtctacgtgtcactttgcgtgggcgttccactcggaggctgaggaggag
atgttgaatatgatcccggccatgcagagaggagaccctcagtggtctgagctacgggct
gtaggggtgggctggtggatacgcaacatcaacacactacgcaggatggtggagaaggtg
ggtaaagcagcgttccagaggaacaatgatcctttagatgcagctctgttctacctggcc
atgaagaagaaggctgttctctggggcctgttcaggtctcagcgtgatgagaagatgacg
gtgttctttaagaataacttcagtgaggaccgctggcgtaaagcagctctgaagaacgct
ttctctctgctggggaaacagcgctttgaacaggctgctgccttcttcctgctggctggc
tccctgaaagacgccatcgaggtgtgcttggagaagatggaagatatccagttggccatg
gtagtagccaggctgtacgaggctgactatgagagcagttccacctgccaagccatcctg
tatgagaaggttttgggctgccagagggacgggtcagggtaccactgcaccaaactacac
ccggacccattcctacgcagcatagccttctggatcatgaaggactacaccaaggctctg
gacacactgctagagtgcatccccaaagaggatgatgagaacccagatgtgatggtgaag
tcgtgtaacccagtggtatttagtttctataactacctgaggacacaccccctgatcatc
cgccgtcactatgcgtcccctgagggtgctgtgacatcatcactaggcctcacctcggag
aagagcagcgtcgacgagatcaacctcatcgaacgcaaactcttcttcaccaccgccaac
gcacacttcaaggtgggctgtccagtgcttgccctggaggtgctctctaagatccccaag
gtgaccaagaagtcagtctcctcgtcccccctaagtaaaggctcttccatggccaacgtc
agctctagcctgcccctggagaatgggaaccagggggccctggactgggcctctcctgcc
ccagttaaggccaatcctgcctggggtacagaggagagctcagccacactggactggagc
cagcctctggtcaaagtggaggacgatggactccagctggactggggagatgataagaac
gatgaagatgatactgatggtggtctgacaatgaagaagactgatgtggagaccaaagct
gacgaggggtctgggggggtgagaccacctgggctgcagagagaggactctcagggtgag
tctgaggtggacgtgatcgcagagcagctgaagttcagagcgtgtctgaagatactgatg
acagagctcaggacgttagctacgggctatgaggtggacggagggaagctgcgctttcag
ctttacagctggttagagaaggagataggggccatgcaccgcatctgcaactacaaggtg
acggggaaggaggagagccaggagctggagagatgggatgatggaggagtagaggacgtg
tttgaggagtccctggggggtggcgggggtacggaggcgggggcgtatgagcgccaccag
ctggggcgtaggcgtctcgcagccaagcagcttcatgctgagaggaggaaggcgtggctg
aggaagaaccaggctctgctccgagtcttcctgtcctactgcagcctgcacggagccaag
ggagggggggtcacctcagtacgcatggagctcatcttcctgctgcaagagagccaacag
gagactacagtgaaacagctccagtcccccctgcccctccccaccaccctccccctcctc
tcagccagtatcgccaccaccaagacagtgatctccaaccctgtcctccaccttagcaac
cacatccatgacatccttcacaccatcacacagatggagttgcctccacaccctgacctc
atggacgacagggtgaatctcctgcacaccctggctgcctctctatctgcctgcatctat
caagccctgtgtgacagccatagctacagcagccaggcagaggccaatcagtttacaggg
atggtgtaccagggcctgctgctgagtgagaggagacggttacgcaccgagagcatcgag
gagcatgctacacccacctctgcccccgcgcagtggccaggtgtgtcctctctgattgct
ctggttcagtcagctcagggcgaggatcagcccaagctcaacgtgttgctgtgtgaggct
gtggtggcagtttacctgtccctgctcatccacgggttgggcatgcacgctggcaacgaa
ctattccgcctcgctgctcaccccctcagcaacaagatgtgggcggccgtgtttgggggt
ggggctaaaatcatcatcaaaccgaaacggaacgtcgagatcactccagcagcagcagca
ggtaaagctagaacggactcgtcatcatcagtgacccctgaacctgactcagggactaag
gctaaaccagccgtgccagcccctcccccggcagaggatgtggatcgactcagacgacgg
tttaatatgaggatgctggttcctggtcgtccagtaaaggaggtccctgccacaccccct
cccgtccctgcagagagacccgcctacagggagaagttcattcctccagagctcagcatg
tgggactactttgtggccaaacccttcctgcccctgtcagacagtggagctctgtatgac
tcagatgagagcggagaggaggatgacgacgacgatgatgatgatgctttcctctctgac
acacagatgactgaacactctgaccccaactcatacagttggtctctgatccgtctggtc
atggtgaaactggctctacataacgtcaagaccttcctccctctcactggactggacttc
acagacctgccggtgacgtctcctctggggaatgctgtgctgaagacactagagaactgg
gagacccaactccaggagaggatgaacaagtttgatggtcctcctcccaactacatcaac
acctaccccactgacctcagcacaggaggggggcccgccatactgaggcacaaggccatg
ctggagcctgacaacacacctttcaagaataagaaccacatttcgttccctgcgaggcgt
ctctggcactacctggtgaaacaggaagttcttcaggagactttgattcgctatatcttc
actaagaagaggaagcagagcgaggtggagggagacttaggctacccaggaaggaatgct
aagatcatccacaaggagtctgacatcatcatggccttcgccatcaacagggctaacacc
aatgagatagtgctggcgtccactcacgacgtgcaggaggttgatgtgtccactctgtta
gctgctcagccctacacctggataggagaggactttgacaaggagtcacacagttctgat
gacgtggactaccgttcttcccacactaacgttgcccaggcctcctctaccccgtcccac
ttcaaccccaaagacatggcagcctctgcatccatgccctggctggggagtgggcagacc
agcatgggtgctagtgtgattatgaagaggaacctgaacaatgtgaagagaatgacctcc
caccccatattccagtactatatgactggggctcaggacggcagtgtccgtatgtttgag
tggaacaggccacagcaactcatctgcttcagacaggcaggcaatgccagagtcacacgc
ctctacttcaactcacagggaaacaagtgtggtgtatcagatggagaaggcttcctcagt
ctgtggcaggtcaaccagacctcctccaaccccaagccctacgtgagttggcagtgccac
tctaagacctgtggtgattttgccttcatcactntctccagtctcatcgcaacggcagga
cagtccaacgacagcagaaatgtctgcctgtgggacactcttatttcacctagtaacgcc
atggtacatgccttcccgtgccatgagaacggtgccacggtgttgcagtacgctcccaag
cagcagctgctgatctcgggaggcaggaagggctttgtgtgtgtgtttgacatccgacag
agacagctgctacacaccttccaggcccacgactcagccgtcaaagccctggcgctcgac
acctccgaagacttcttcgtaaccggctcggctgaggggaacatgaaggtgtggaagctg
gcaggccatggcctcatgcactcgtttagcacagagcatgccaagcagtccatcttccgg
aacatcggagcaggcgtcatgcaggtggagacccgccccggcaaccgcatattcacctgc
ggcgccgacggaaccctcaagatgagggttctacccgaccgctacaacatcccctctagc
atcttcgacattctgtag
DBGET
integrated database retrieval system
