Oncorhynchus kisutch (coho salmon): 109895659
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Entry
109895659 CDS
T09179
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A isoform X1
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03030
DNA replication
oki03410
Base excision repair
oki03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109895659 (pole)
03410 Base excision repair
109895659 (pole)
03420 Nucleotide excision repair
109895659 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oki03032
]
109895659 (pole)
03400 DNA repair and recombination proteins [BR:
oki03400
]
109895659 (pole)
Enzymes [BR:
oki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
109895659 (pole)
DNA replication proteins [BR:
oki03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
109895659 (pole)
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
109895659 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
Motif
Other DBs
NCBI-GeneID:
109895659
NCBI-ProteinID:
XP_020345131
Ensembl:
ENSOKIG00005047293
LinkDB
All DBs
Position
LG8:41056727..41094511
Genome browser
AA seq
2293 aa
AA seq
DB search
MVLQNSGRYRSERGQGGDQDNQQDDRSSMSAAIRLERSQFTDEMDTRFGFERMKDPGEKT
GWLINMHPTEILDDDKRMVSAVDYYFIQEDGSRFKVPLPFKPYFYIATKKNCEREVISFL
SKKFQGKVAKLEMLPKEDLDLPNHLVGLKRSYIKLSFNTVDDLMKVKREISPAVRKNRER
EKSNDTYTSMLSSALAGGSVSAADEDGMSKKTSDQMDNIVDMREYDVPYHVRLSIDLKIH
VAHWYNVRYRGSAYPPEIILRSDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYM
IDGQGYLITNREIVSEDIEDFEFTPKPEYEGPFTVFNEPDEAGLIQRWFEHVQETKPEIF
VTYNGDFFDWPFVETRAAHHGLNMYREIGFQKDNQGEYRASQAIHMDAFRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEESQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAYHANIVFPNKQEQVFNKLTDDGHVMDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVEETLRHAIEEEEKIPLEQVTNFNEV
CDEIKKKLLSLKEVPNRIECPLIYHLDVAAMYPNIILTNRLQPSAMVDEATCAACDFNKP
GANCQRKMSWQWRGEIMPASRSEFHRIQQQLESEKFPPLFPNGRPRAFHELNLEEQARHE
KKRLGDYCRRAYKKVRQTKLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
SAAQESGDAALVKRCKNMEILYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTG
ANIITQARELVEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNEKKPKVTISYPGAMLNI
MVKEGFTNDQYQELVDPASLTYETRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYDSVAKVADYWLDVLYS
KAANMPDAELFELISENRSMSRKLEDYGEQKSNTISTAKRLAEFLGDQMVKDAGLSCRYI
ISRKPEGTPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHDLDIRSILDWSYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAHHA
MEAGQAADIEDFGMPARPLQPAILISTKRKRVSQGENSQAVESQEMELTQSWREILGPPP
PTGETQEARLVWLRYHKKKWELQLRQRKERRKRRRLLDGEVQAMGGGVIRDAGPATGLGS
FLRRTARSILDMPWQIVQIAETSHPGLYKLWAVIGSDLHCMKLNIPRVFYVNQKVPKQEE
GATYKKVNRLLPRSNVVYYLYQYSVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRA
LVQLGCMCMVNKQLVRDLGGREAETYDLEHLEMRSLAQFSYLEPGSVRHIYLYHHSQGHK
ALFGLFIPSQRKASIFVLDTVRSNQMPNLNTLYGAERTALLEKTSEELLPPEKHTFEVRA
ENDVKAIHRALQRILLNYKGERRGPTLIAVQSNWELRRLVAGMPVLEEFPVVPVHVVDEI
SYNVLDWQRHGARRMVRHYLNLDSCLSQAFDMARYYHLPVGNLPHDVSIFGSDLFLARHL
RKHNHLLWLSPTARPDLGGKEADDSRLVMEADDRGSMEINAQGCYSTVCVELDLQSLAVN
TILQSQHVNDMEGGASLGVSFDVIQQASLEEMMSGNQGASAVASYDETALCSNTFRILKS
MVVGWVREITRYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLVAEFK
RLGSTVVYGNFNRILLCTKKRRIDDAIGYVEYITNSIHSREIFHSLSISFSRCWEFLMWM
DLANYGGVKGKLPSSVLYGENGTTQKKGKENGEEEGSEDEEEADEEEEDGAGEVDEVEEL
IESSWNIMQYLPQTASCQKYFLMIISAYIAAIYHSMREELRRNAPGATPIKRRGGSQTSQ
QAAGDSTALPGMISFSQEYVSSELTQNFFTITQKIQKKVTGTRSVTQPSEMFPVLPGSHL
PLSNPALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEEAQFRDPCNSYILPE
VICHHCNFCRDLDLCKDPSVAQDGSVLPQWFCSNCQTQYETESIEMALVEALQKKLMSYT
LQDLACAKCKGVKEANMPLYCTCAGDFELTFPTKSFSEQIKVFRNIAAHYNMNFLEETID
WLLVMSPQISQSR
NT seq
6882 nt
NT seq
+upstream
nt +downstream
nt
atggttttacaaaacagtggacggtacaggtcagagagaggacaagggggtgaccaggac
aatcaacaggatgaccggtcatccatgtcggctgctatccggctagagcgcagccagttc
accgacgagatggacacccgctttgggttcgagaggatgaaggacccaggagagaagact
ggctggctcatcaacatgcaccctacagagattctggacgatgacaaacggatggtcagc
gctgtggactattatttcatccaggaagatggcagcaggttcaaagtacccctccccttt
aagccctatttctacatagccactaaaaagaactgtgagagagaagtcatctcattcttg
tccaagaagttccaagggaaggtggcgaagctggagatgctcccaaaggaggacctggat
ctgcccaatcacctggtgggactaaagaggagctacatcaagctttcattcaacactgtg
gatgacctcatgaaggtcaaacgggagatctcgccggcggtgcgcaagaatcgggagagg
gagaagtccaacgatacctacacctccatgttatcaagtgcgttggcaggaggcagtgtc
tcggcagcggatgaagatggcatgtccaagaaaacctctgaccagatggacaacatagtg
gacatgagagagtacgatgtgccttaccacgtgcgcctgtccatcgaccttaagatccac
gtggctcactggtacaacgttcggtacaggggtagtgcataccctccagagatcatactg
agaagcgacctggtggaacgaccagacccagttgtgctggcctttgacatcgagaccacc
aagcttcctctgaaattccctgacgcagaaacggaccagattatgatgatatcctacatg
atcgacggacagggctacctgatcacaaaccgagagattgtctctgaggacattgaggac
tttgagttcacccctaagccagagtacgagggacccttcactgtattcaatgagccggac
gaggcgggtctcattcagcgatggttcgagcacgtccaagaaaccaagcccgaaatcttt
gtcacctacaacggagactttttcgattggccctttgtggagaccagggctgcccaccac
ggcctgaacatgtacagagagattggcttccagaaggacaaccagggcgagtacagggct
agccaggctatccacatggacgcctttaggtgggtgaagcgtgacagctacctgccggtg
ggcagtcacaacctgaaggcggcggccaaggccaagctgggctatgacccagtggagctg
gaccccgaggagatgtgccgcatggccacagaggagtcacagactctggccacttactct
gtgtcggatgccgtggccacgtattatctttacatgaagtacgtccaccccttcatcttt
gctctttgcaccatcatccctatggagccggatgaggtgctgcgtaagggttcggggacc
ctttgtgaggcgctgctcatggtgcaggcctaccatgccaacatcgtcttccccaacaag
caggagcaggtgttcaacaagctgacagacgatggtcacgtcatggactctgagacctac
gtggggggtcacgtggaggccctagagtccggcgtgttccgcagcgacatcccctgccgc
ttcaaaatgaatccggcggcatttgacttcctgcttcagcgggtggaggaaacgctgcgt
cacgccatcgaggaggaggagaagattcccctggagcaagtcaccaacttcaacgaggtg
tgtgacgagatcaagaagaagctcctctctttgaaggaggtccccaacaggatcgagtgt
ccactcatctaccatctggacgtggcggccatgtaccccaacatcatcctcaccaaccgc
ctgcagccctctgctatggttgacgaggccacgtgtgctgcctgcgatttcaacaagccg
ggggccaactgtcagaggaagatgagctggcaatggaggggggagatcatgccggccagc
cgcagtgagttccaccgcatccagcagcagctggaatcagagaagtttcctccgctcttc
cctaacggccggccgcgggccttccatgagctcaacctggaggagcaggcccgccacgag
aagaaacgcctgggcgactactgcaggagggcctataagaaggtccgccagaccaagctg
gaggagcgggtcaccaccatctgccagagggagaactccttctacgtggacactgtgcga
gccttcagagaccgtcgctatgagtttaagggactgcacaaggtgtggaagaagaaactg
tctgcagcccaggaaagtggtgacgctgccctggtgaagcgctgtaagaacatggagatc
ctctacgattctctccagctagcccacaagtgcatcctcaactccttctatggctacgtc
atgaggaaaggggcccgctggtactccatggagatggctggcatagtgtgctacaccgga
gccaacatcatcacccaggccagagagctcgtggaacagatcgggaggcctctggagctg
gacacggatggtatctggtgcgtcctgcccaacaccttccccgagaactttgtggtgaag
acgagcaacgagaagaagcccaaggtgaccatctcctacccgggcgccatgctcaacatc
atggtgaaggaaggcttcaccaacgaccagtaccaggagctggtggaccctgcctcgctg
acctatgagacgcgggcggaaaacagcatcttcttcgaggtggacgggccctacctggcc
atgatcctgcccgcctccaaagaggagggaaagaaactgaagaaaaggtacgctgtgttc
aacgaggacggctcgctggccgagctcaagggcttcgaggtgaagaggcgaggcgagctg
cagctcatcaagatcttccagtcgtctgtgttcgaggccttcctcaaaggcaccactcta
gaggaggtgtatgactcggtggccaaggtggccgactactggctcgacgtgctctacagc
aaggctgccaacatgccggacgcggagctgtttgagctcatctcggagaaccgctccatg
tcgcggaagctggaggactatggcgagcagaagtccaacaccatcagcacggccaagcgg
ctggccgagttcctgggtgaccagatggtgaaggacgccgggctgagctgccgctacatc
atttcccgcaagccagagggcacgccggtcacggagcgggccatccccctggctatcttc
caagctgaacccagtgttaagaagcacttcctgcgcaagtggctgaagatgcccagcctc
cacgacctcgacatccgctccatccttgactggagctactacattgagagattgggtagt
gccatccagaaaatcatcaccattccagctgccctgcaacaggtgaagaaccccgtgccc
agagtgcgccacccggactggctccacaagaagctgctggagaagaacgacatctacaag
cagaagaagatcagcgagctgttcaccagcgagggcaagagacaggtggcccatcatgcc
atggaggcagggcaggcggctgacattgaggactttgggatgcctgcccgacccctgcag
ccggccatactgatcagcacgaagcgcaagcgggtgtcgcagggagagaacagccaggcc
gtggagtcccaggagatggagctcacccagtcctggagggagatcctcggccctccacca
cccactggggaaacgcaggaggcgcgcctggtgtggctgcgctaccacaagaagaagtgg
gagctgcagctgcggcagaggaaggagcgccggaagcgccggcgcctgctggacggcgag
gtccaggccatggggggaggggtgatccgggacgcgggccccgccacaggcctgggtagc
ttcctccgccgcacggcgcgcagtatcctggacatgccctggcagatcgtacagattgca
gagaccagtcaccctgggctgtataagctgtgggctgtgatcggcagtgacctgcactgc
atgaagctcaacatcccgcgggtgttctacgtcaaccagaaggtccccaagcaggaggag
ggagccacatacaagaaggtgaaccgccttctgccgcgctccaacgtcgtctactacctg
taccagtactctgtccctgaggacatgtaccaggagcacatcaacgagatcaacgctgac
ctctctgccccagacatagagggggtctacgagacacaggtccctctgctgttccgggcc
ctggtacagctgggctgtatgtgcatggtcaacaagcagttggtccgggacctgggcggc
cgggaggctgagacgtacgacctggagcacctggagatgaggtccctggcccagttcagc
taccttgagcctgggagcgtccgacacatctacctttaccaccacagccagggccacaaa
gccctgttcggcctgttcatcccctcacagcgcaaggccagcatctttgtcctggacacg
gttcgcagtaaccagatgcccaacctgaacaccctgtatggggcagagcgtacagctctg
ctggagaagaccagcgaagagctcctgccccccgagaaacacacctttgaggtgcgggct
gagaacgacgtgaaggccatccaccgagccctgcagcgcatactgctcaactacaagggg
gagcgccgcgggcccaccctgatcgcagtgcagtccaactgggagctgaggcggctggtg
gcgggcatgccggtgctagaggagttcccggtggtgccggtgcatgtggtggacgagatc
agctacaacgtgctggactggcagcgccacggtgcccgccgcatggtccgccactacctc
aacctggacagctgcctgtcgcaggcttttgacatggccagatactaccacttgccggtg
gggaacctgccccacgacgtgtccatctttggttctgacctgttcctggccaggcacctg
aggaaacacaaccacctgctgtggctgtcccccaccgccaggcctgacctggggggcaag
gaggccgacgacagcaggctggtgatggaggctgatgaccggggctccatggagatcaac
gctcagggctgctactcaacagtgtgtgtggagctggacctgcagagtttggctgtcaac
accatcctgcagtcgcagcatgtcaacgacatggagggaggagccagcctgggcgtcagc
tttgacgtcatccagcaagcctcgctggaggaaatgatgtcggggaaccagggcgccagt
gccgtggccagctacgacgagaccgccctctgctccaacaccttcaggatcctgaagagc
atggtggttggctgggtgcgggagatcacgcggtaccacaacgtctacgccgacaaccag
gtgatgcacttctaccgctggctacgctcgcccagctcgctgctttacgacccggcgctg
caccgcaccctacacaacatgatgaagaaagtattcctccaactggtggcagagttcaag
cggctgggctccaccgtggtatacgggaactttaaccgcatcctcctttgcactaagaag
cggaggattgacgacgccatcggctacgtggagtacatcaccaacagcattcactcgcgg
gaaatcttccactccctctccatctccttctcccgctgctgggagttccttatgtggatg
gatctggccaactatggaggcgtgaagggcaaactgccctccagcgtcctgtatggagag
aacgggacaacccagaagaaggggaaagagaatggagaggaggagggcagcgaggacgag
gaggaagctgacgaggaggaggaggatggagccggagaggtggatgaggtggaggagctg
atcgagagcagctggaacatcatgcagtatctgcctcagaccgcctcctgtcagaaatac
ttcctcatgatcatttccgcctatattgctgccatctaccacagcatgcgggaggagcta
agacgcaatgccccgggagccacgcccattaagaggcggggcggaagccagacttcccag
caggcagcaggagattccacagcacttcccggtatgatctccttctctcaagagtatgtg
tccagcgagctgacccagaacttcttcaccatcacccagaagatccagaagaaggtgaca
ggcacccggagcgtgacccagccctcagaaatgttccccgtcctgcctggctcccacctg
cctctcagcaacccagccctggaattcatcaaatacgtctgccaggtcctctccctggat
gccaacatagtgaaccaggtgaacaagctgaagagggacctgttgcgtctggtagatgtg
ggtgagttctcggaggaagcccagttccgcgacccctgcaactcttacatcctgcccgag
gtcatctgccaccactgcaacttctgccgcgacctcgacctttgcaaggacccctcggtg
gcacaggacggctctgttttgccccagtggttctgctccaactgccagacccagtatgag
actgagtccattgagatggccctggtggaggccttgcagaagaaactcatgagctacact
ctgcaggacctggcttgtgccaagtgtaaaggagtgaaggaggccaacatgcctctttac
tgcacttgtgcaggagactttgaacttaccttccccaccaagagtttctcagagcagatc
aaagtgtttcggaacatcgccgcacactacaacatgaacttcctggaagagaccattgac
tggctactggtcatgagtccacaaataagccagtctagatga
DBGET
integrated database retrieval system
