Oncorhynchus kisutch (coho salmon): 109895677
Help
Entry
109895677 CDS
T09179
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109895677
Membrane trafficking [BR:
oki04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
109895677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
Fer4_11
DUF5764
Motif
Other DBs
NCBI-GeneID:
109895677
NCBI-ProteinID:
XP_020345157
Ensembl:
ENSOKIG00005029547
LinkDB
All DBs
Position
LG8:40026087..40081029
Genome browser
AA seq
3261 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQENPALEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPNCPFSFGVSLQ
NLSLQTADENWMPCLLDEKAKLFFKLVQLDNLFAYWNVNSMLYSNHMPDEALRCLQDSIP
GGSTPMNHDFIFRPITADAKLRMNPRSDVDFSSPKVDLVVNLREVAVELNRPQYISILEL
LGSVDMMSRNLPYRKYRPQVHVHTNAYLWWQYVITGIMEVDVKPRLHMWSWQHIRCHRQT
VKQYRELYKAKITSKKPTEKQLRELEEPERTLDIFNITLARQQAEMEASKAGLRIFRPGV
KVEEEESQGWLGWMWSGWSGDCGAEAKEVKTGAFDELMTSAEKAKLYTAIGYSEIAVNHN
LPKNFEDMKINFHMERMSVSMKDNKDQNEILKLTVEDLKSMLTQRPGAQAIKLSAQLSLF
EVTGLASNRPAPTLLSSRKAATVTGTPLLDILFETNPLDESADQRLRVESQPLEIIYDAV
TVNSMSAFFSPPDDLQLDDLTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYV
IVPQTGFYDSTQNLMLLDLGHFKVSSLSREGLPQLSVGRSTIEDIMSRAYDSFDVQLSSL
QFLYSKPDGDWKKARKLRQSALHILEPVDVKVVFSRAMVVTDSRMPKFKISGELPLLSLR
ISDDKVRGVLELIDSIPLPESRPAPRSTNTHSTSKALKQSYTPQLTPRKPTMAELRNSLI
WESGSEEDLFYDAPSSPIGDRPFFPDNMPSPLQRSNSVKRRGLVKKDPKKNMTEFLMTFE
ISKLSVQLCRLSGGEEVTVLHLEIEGLGTELKLRTFDMSSYTFLREICLECPEYMDSEEK
KVHLITTLDNTEDDLLTLEYTKADKNGPEFKSEYKNTEQSVKVNFSSLDIHLHTEALLNA
MNFLISLLPPTKEVAPSQEELPTIPEEDEGEGEEGEKKEGSAVAKKNSSKKSKFEDVVNL
HIRADLNCLKVFIRGQSHRIAEIRIEGLVSEVLMRKKAVEVLANLKNIVILDCDKEALYK
QCVSIADEEVFAFRMVNHTEATEGDAYLDMGKVDTSVTLTVGCIQVIFLNKFVSSILAFI
NNFQVAKEALAEVTVQAAEKAATGVMELAERSTRISLDVDFNAPVVFLPQSSSSANVIVA
DLGMVTVKNRFAMVPSQMHVKIPPVMDTMTVGLSDLKMYRTTFEEGRFQGEIQLLKPVNL
DLSIQRNLSASWYHSIPDIEITAHLKPMNLILGQDDMTVVLRTLSGNLSETSDSASPPPP
PRTVDRSDTASTKGSQASGGTGSNPTSGNTVVTAAVVETQKSTKLKSTLKLDFKFDSMTL
VLYSPNGTEVQVLDSRDEQLKLAEFTLGTISTSVHMFSDGSMKASVKLTDCLLDDKRCRV
KKITARMMAMRPGAERNVMVEVNYKQGRDGTSLDTVVQDVYLCASMEFLLTVADIFLKAS
QQGFSSATPKNSSSTKPTAAAASKESAPVGVVAKSEINVLVKNPEIVFVADLTRADAPAL
VMTTECELVMKSDLDGQLMTAVVKDLKVVACPFLKEKRNKETTVLQPCQVFFKSTQSSTS
PQAMEVCINALTLKVSPIIINTVITIQSVLSPAGAETPQSELESPVPPDLWERRSWRDLK
LWFLEEEGKDEDAQSLVPLIPQGESLQLAINSICLTLEAGVGHRTVPMLLAKSSFHGDVK
NWSTLINLHSQLNLEVHYFNEVMGVWEPLLEPLEDETRDGFRPWTLGLKMKKKPVKYTGI
SEEVDYSIPDYKTVISISSKDQLNITLSKCGLGMLSNLGTAFAEAAKQASDSFQKDEAPF
VVKNRLGLTVSVVHSELFSPLGREATARRVELQDGESLNMDYRRTTTHSDQFSAMTSLVA
KDYYIQPTPVGHTSTGMIPLIKVGRGMYSVMHKDSGVTRFLVCQIYSVEGSKYIKIRSPF
QIINHFSIPFRVMEGSTSLGISLPTEEFCVPLDSYRSELRLQPVTEGDDQYDCSEGFSYE
LVSQQPGARVQQTCHRHGDSAGVLMVNIVPLKDTVTSQHTGMAGENFDEPYILHLWPSVL
LRNLLPYPITYRLQDSEEPTPITLMDGHSAQLHTAIMDQSSLELRLLDYLGQDWQAHYGL
CGDLDEITFIVFSSLRDEEEVVRLGEGKRAELDIAVHVKYDAGQTEVAIHSPYWMVNKTG
RLLQYKADDIHRKHAMDYDMPLLFSFKPHNFLQNNKVRLMISDSDLSDDFSLDTVGSYGE
VKCKGRLKDYVIGVKIDASSFSLTRIVSFVPYYLLVNRTKHVIWVGEEGQDDWTEARPQQ
AAIPFWPERDSKKLKVKVEGSRSTPQTMDFTKPENCLLLHLDNTLGGVIMDVNLSDHSII
IRFSDYHDGAAPFLIINHTQEQTVEFYQRFRRDSSEWVADELLGLSFSVEETQPSSQKEK
DKLSPGKAMYYTWAEPTGSRSLAWQCGSYSGELRSEEDLRLDVNEEGKLYLISFYEGLQR
VALFTEDRRIYKLLCESEKAELAEQEIILSLQDVGVSLVNNSSRQEVSFIGITSSDVVWE
SKPKKKSRWKPLSGKDAELLETHFKEYTESGPVDNAILDLENNFQVSLTHNGQDMRMMQP
YDAPIRRSFLPGVKVEYSVSARQSAYRVQINRIQIQNQLPGAIFPYVFYPIKLPKSVTMD
SEPKPLTDISIVTRAAGHSDISRIKYFKVLIQEMDLKLDLGFLYAILDLFTPENASVMTS
EQQVELFEKDIEYLKTELNDVSATDTSPISLYEYFHISPIKLHLSFSLSSGGEDGNKEKR
ETEIIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFRTRQQLQWEVIRHYSKQAIK
QMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALVGGAV
GGIAGAASRITGAMAKGVAAMTMDEEYQQKRREAMNKQPSGLREGLTRGGKGLVSGFVSG
ITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRAAETSQDV
ESLRPPRFIHEDGVIRPYKEREGIGSQMLQKIENGRFAKYRYFAHAKVNESDFLMITKRG
IFFVTKGTFGQLTCEWQYLFDEFTKEPMIVEGRRLRIEAKERVKSVFHAKEFGKIINFRS
PEIAKWVLTKLEDARESLHKY
NT seq
9786 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtagatgtcctaaacaggtttttaggggattacgttgta
aaccttgacagctcacaactcaagctcgggatttggggaggtgatgcagtgctcagaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtaagagcaggg
catataggacgcttggagttgaagattccatggaagaatctgtacacccagtcagtggaa
gccacgctggatggagtctacctactcatcgtgcccacagccagtataaagtatgatgca
gagaaggaggagaaacagctccaggaggctcgtcagagggagctgcagaggatcgaagag
accaaacagaaagcagcagagcaagaaaaccccgcacttgagaagcaggacacctttgtg
gagaaacttgtgacgcaggtgatcaagaaccttcaagtgaagatctccaacatccacgtc
cgctatgaggatgatgtcaccaaccccaattgccccttttcatttggagtgtcactgcag
aacctcagccttcagacagcagatgagaattggatgccttgtctcctggatgagaaagcc
aagctgtttttcaagcttgtccagttggacaatctctttgcttactggaatgtgaactcg
atgctgtactccaatcacatgccagatgaggccctgcgatgcctccaggacagcatcccg
gggggttccactcccatgaaccacgatttcatttttcgtccgataacggccgatgcgaag
ctgcgcatgaacccccggtcggatgtggacttctcctctcccaaggtggacctggtggtc
aacctaagagaggtggccgtggagctcaacagaccacagtacatcagcattctggagctc
ctgggatcagtggatatgatgtcacgcaacctgccctataggaaataccggccgcaagtc
cacgtgcacaccaacgcctatctatggtggcagtatgtgatcacaggcatcatggaggtg
gacgtgaagccgcggctgcacatgtggtcgtggcagcacatccgctgccaccggcagaca
gtcaagcagtacagagagctctacaaggccaagatcaccagcaagaagcccactgagaag
cagctcagggagctggaggagcctgagcggactctggatatttttaacatcactctggcc
aggcagcaagctgagatggaggcaagcaaagcagggctgcgtatcttccgtccgggggtg
aaggtggaggaggaggaatctcagggctggttgggctggatgtggtccggctggtcagga
gactgtggcgccgaggccaaggaggtcaagaccggagcttttgacgagcttatgacttct
gctgagaaggccaaactctacaccgccatcggctacagtgagatagctgtcaatcataac
ctgccaaagaactttgaggatatgaagattaatttccacatggagaggatgtctgtctca
atgaaagacaacaaggaccagaatgaaatcctcaaactcacagttgaagatctgaaatcc
atgctgacccagaggcccggagcacaagccattaagttgtcggcccagctcagtctgttt
gaggtgacaggactagctagtaaccggccggcacccacattgctgtcgtcaaggaaggct
gccacggtaacggggacgcccttgttggacatcctgtttgagaccaaccctctggacgag
agcgctgatcagcggctccgcgtcgagtcccagcctctggagatcatctatgatgctgtg
acggtaaacagcatgtctgcgttcttctcgccgcctgatgacctccagctggacgatctg
accaacgccactctcatgaagctggagcagttccgagaccgcacctccacaggactgatg
tacgtgattgagacccagaaggttctggatctgaacgtcaacctcatggcctcctacgta
atcgttccccaaaccggcttctacgactccacccagaacctcatgctattggacctgggc
cacttcaaggtgtctagtctgagcagagaggggctgccgcagctctctgttgggagaagt
actatagaggacattatgtcccgggcctacgacagcttcgacgttcagctcagcagcctt
cagttcctctacagcaaaccagatggggactggaagaaagcccgtaagctgaggcagtcg
gccctccacatcctggagcctgtcgacgtcaaggtggtgttcagcagagccatggtggtc
acagattcccgcatgcccaagtttaaaatctccggggagctgcccctcctgtctctgagg
atctctgatgataaggtgcggggcgtgctggagctgatcgacagtatcccgctgccagag
agcaggccggccccgcgcagcaccaacactcactcaacatccaaggctttaaagcagtcg
tacacccctcagctaacccccaggaaaccaaccatggctgaactgcgcaactccctgata
tgggaatcaggctcagaggaggacctgttctacgatgctcccagctctcctataggagac
cgtccattcttccccgacaacatgcccagccccctgcagcgctccaactcagtcaagagg
agaggtctggtaaagaaagaccccaagaagaacatgaccgagttcctcatgacgtttgag
atcagcaaactgtccgttcagctgtgtcgtctctctggaggcgaggaggtcacagtgttg
cacctggaaatcgaggggctgggcaccgagctgaagctacgtaccttcgacatgtcatcc
tacacgttcctacgagagatctgcctggagtgccccgagtacatggattcagaggagaag
aaagtgcacctgatcaccactctagacaacacagaggatgacctcctcacattggagtac
actaaggctgataagaatgggccagaattcaagtctgagtacaagaacactgaacaatca
gttaaggtgaacttctcgtctctggacatacacctgcacacggaggctctgctcaatgcc
atgaacttcctgatcagtctcctccccccgaccaaggaggtggcgcccagccaggaggag
ctgcccaccatcccagaggaggacgagggagagggggaggaaggcgagaagaaagaggga
tcggctgtggcaaaaaaaaactcttctaagaagtcaaagtttgaggatgtggtgaatttg
cacatcagagccgatctcaactgtctgaaggttttcatccgaggccagagccacaggata
gcggagatccgcatcgagggcctggtgtcggaggtgctgatgaggaaaaaagcggtagag
gttctggccaacctgaagaacatagtcatcctggactgtgataaggaggcgttgtacaag
cagtgtgtgtccatagctgatgaggaggtgtttgctttccgcatggtgaaccacactgaa
gccacggagggcgacgcctatctagacatgggtaaagtggacaccagcgtcaccctgacg
gtgggctgcatccaggtcatcttcctcaacaagtttgtctcctccatcctggccttcatc
aacaacttccaggtggccaaggaggccctggctgaggtgacggtgcaggcggcggagaag
gcggccacgggggtgatggagctggctgagcgcagcacccgcatctccctggacgtggac
ttcaacgctcccgtcgtcttcctgccgcagtcgtcgtcctccgccaacgtcatcgtggcc
gacctcggtatggtcacggtcaagaaccgcttcgccatggtcccctcccaaatgcacgtc
aagatccctcccgtcatggacaccatgaccgtgggcctcagcgacctcaagatgtacaga
accacctttgaggaggggaggtttcagggggaaatccagcttctgaagccggtcaacctg
gacctgtccatccagaggaacctgtcagcctcctggtaccacagcatccccgacatagag
atcactgctcacctcaaaccaatgaacctgatcctgggtcaggatgatatgacggtggtg
ttgaggactctgagtgggaacctgtcagagacgtcagactctgcttccccccctcctcct
ccgcgtactgtggaccgctccgacacggcctctaccaaaggctcacaggcgtcaggaggt
actggtagtaaccccaccagcggcaacacggtggtaactgctgcagtggtggagacccag
aagagcaccaagctgaagagcacactcaaactggacttcaagtttgactccatgaccctg
gtcctgtacagccccaatgggactgaggtgcaggtgttggactcgagggatgagcagctg
aagctggctgagttcaccctggggactatctctacatctgtccacatgttctcagacgga
tctatgaaggcctccgtcaaactcacagactgcctgctagacgacaaaagatgcagggtc
aagaagatcactgccaggatgatggcgatgcgtccgggcgctgagaggaatgtgatggtg
gaggtgaactacaagcagggccgcgacggcacctctttggacacggtggtgcaggacgtg
tacctctgtgccagcatggagttcctgctcactgtggccgacatcttcctcaaagccagc
cagcagggcttctcctccgccacccccaagaacagcagtagcactaaacccactgcagcc
gcagcctccaaggaatctgctccagtgggggtggtggcaaagtcagagattaatgttctg
gtgaagaaccccgagattgtgtttgtggccgacctgacacgtgccgacgccccggccctg
gtcatgaccacggagtgcgagctggtgatgaagagcgacctggacggtcagttgatgact
gcggtggtcaaggacctgaaggtggtggcctgccccttcctgaaggagaagaggaacaag
gagaccactgtgctgcagccctgccaagtgttcttcaagagcacacagtcctccacctcc
ccgcaggccatggaggtctgcatcaacgcactcacactcaaggtgtcgcccatcattatc
aacaccgtgattaccattcagtcggtgctgagcccggccggtgccgagacaccccagtct
gagctggagagccccgtgcccccagacctgtgggagcgccggtcctggagggacctcaag
ctgtggttcctggaggaggagggtaaagacgaggatgcccagtccctggtcccgctgatt
ccccagggcgagtccctgcagttggccatcaactccatctgcctgacactggaggcaggg
gtgggccaccgcaccgtccccatgctcctggccaagtcctccttccacggtgacgtcaag
aactggagcaccctcatcaacctgcacagccagctcaacctggaggttcactacttcaac
gaggtgatgggggtgtgggagccactgctagagcccctagaagacgagacccgagatgga
ttcagaccctggaccctgggattaaagatgaagaagaagccagtgaagtacacaggtata
tcagaagaagtggactacagcatccctgactacaagaccgtcatcagcatcagcagcaag
gaccaacttaacatcaccctctccaagtgtggactgggcatgctcagtaacctgggcacg
gcctttgcggaggcggccaagcaggcatcggatagtttccagaaggacgaggctccgttc
gtcgtgaagaaccgtctaggtctgactgtgtcggtggtgcacagtgagctgttcagcccc
ctgggtcgcgaggccacggcgcgccgggtagagctgcaggacggagagagcctcaacatg
gactaccgtcgcaccaccacccactcagaccagttctctgccatgacttcattggtggcc
aaggactactacatacagcccactccggtgggccacacttcaacaggcatgatcccgttg
atcaaagtggggcgtggcatgtacagtgtcatgcacaaagactctggggtcacccgtttc
ctggtctgtcagatctactctgtggagggaagcaagtacatcaagatccgctctcccttc
cagatcataaaccacttctccatcccattcagagtgatggagggctctaccagtctgggg
atatcactgcctacagaggagttctgtgtgcctctggactcctacaggtcagagctaaga
ctgcagccggtaaccgagggagacgatcagtacgactgctccgagggtttcagctacgag
ttggtgagccagcagcccggtgcacgtgtgcagcagacctgtcatcgccatggtgacagc
gctggtgtcctcatggtcaacatcgtccctctgaaagacacggtaacatcacaacacaca
ggaatggccggggagaactttgacgagccctacatcctgcacctgtggccctccgtcctg
ctccggaaccttctgccttaccccatcacctatcgcctacaggacagtgaagagcccacc
cccatcaccctgatggacggccactcggcccagctgcacaccgccatcatggaccagtcc
agcctggaactccgccttctcgactacctgggccaggattggcaggcccactacggtctc
tgtggcgacctggatgagatcaccttcattgtgttcagctctctgcgcgatgaagaggag
gtggtcaggttaggagaagggaagagggcggagctcgatattgcggtgcatgtgaagtac
gacgcgggccagactgaggtggccatccattctccctactggatggtgaacaagactggc
cgcctgctgcaatacaaggccgacgacatccaccgcaaacacgccatggactacgatatg
cctctgctcttctccttcaagccacacaactttctgcagaacaacaaggtgcggctgatg
atctcggacagcgacctgtcggatgatttctccctggataccgtgggtagttatggtgaa
gtgaagtgcaaagggaggcttaaagattacgtgatcggagtgaagatcgacgccagcagt
ttcagcctgacccgtatcgtaagctttgtgccatactacctgttagtgaacaggaccaaa
catgtgatctgggtgggagaggagggccaggacgactggaccgaggccagaccacaacag
gcagccatcccgttttggcctgagagggactccaagaagctcaaagtcaaagtagaaggc
agtcggtcaactcctcaaaccatggacttcaccaaaccggaaaactgcctgctgctgcat
ctggacaacactctgggcggagtcattatggatgtgaacctatcggaccactcgattatc
atccgtttctctgactaccacgacggggccgcccccttcctcatcatcaaccacacccag
gagcagacggtggagttctaccagagatttcggagagattcatcagaatgggtggcagac
gagctgctcggcctctccttctcagtagaggagacccagcccagtagtcagaaggagaag
gacaagctaagccccgggaaggcaatgtactacacctgggctgagcccactggatcgcgc
tctctggcctggcagtgtggcagctacagcggcgagctgaggagcgaagaggacctgcgg
ttggacgtgaacgaggagggtaagctgtacctcatctcgttctacgagggcctccagcgg
gtggcgctgttcaccgaggacagacgcatatacaagctgctgtgtgagagtgagaaggcc
gagctggctgaacaggagataatcctctccctgcaagacgtgggcgtctccctggtcaac
aacagcagccgccaggaggtgtccttcatcggtattaccagttcagacgtggtgtgggag
tccaagccaaagaaaaagtctcgctggaaacccctgagtggaaaagatgccgagctgctg
gagacccacttcaaagagtacacagagagtggaccagtggacaacgccatcttagacctg
gagaacaacttccaggtgtctttgacccataatgggcaagacatgaggatgatgcagcca
tatgacgctccaatcaggaggagcttcctgccaggggtgaaggtggagtacagcgtatcg
gcccgccagagtgcctaccgtgtccagatcaaccgcatacagatccagaatcagctacct
ggagcaatcttcccatatgtcttctaccctataaaactacctaagtctgtcaccatggac
tcagagcccaaacctctgaccgacatcagcattgttaccagggcagcagggcactctgat
atctcacgcatcaagtatttcaaggtgctaatccaggagatggatctgaagttggacctg
ggcttcctttatgccatcttggatctgttcactccggagaacgccagcgtgatgacgtca
gagcagcaggtggagttgtttgagaaggacatagagtatctgaagacggagctcaacgac
gtctcggccactgacacatcccctatcagtctctatgagtacttccacatctctcctatc
aagctgcacctcagtttctctctgagttctggaggagaggatggtaacaaggagaagagg
gagaccgagatcatccctgtccagtccctcaatctgctgctgaaaagcatcggagcaacc
ctcactgacgtgcaggatgtcgtcttcaaattggccttcttcgagctgaccttccagttt
cgcactcgccagcaactacaatgggaggtcatcagacactactcgaaacaggcgataaag
cagatgtatgtgctggtgttgggcttggacgtgctgggaaacccctttggactgatccga
ggtctgtcggagggagtggaggctttcttctacgagccctatcagggagctatccagggg
ccagaggagtttgtggagggtatggcgctgggggtgaaagcgctggttggaggagcagta
ggtggcattgcgggcgctgcctccaggatcacaggcgccatggcgaagggtgtggctgcc
atgacgatggacgaggagtaccagcagaagagacgggaggctatgaacaagcagcctagc
ggcctgagagagggcctgacccgcggaggcaaaggactggtgtctggctttgtcagtggg
atcacagggattgtcaccaagcctattaaaggtgctcagaaggagggcgcggcgggcttc
tttaagggtgtgggcaaggggctagtgggtgctgtggccagacccactggaggcatcatc
gacatggccagcagcaccttccagggcatcaagagggcagctgagacgtcccaggatgtg
gagagtctgcgtccgcctcgcttcatccatgaggacggggtcatccgaccatacaaggaa
agagagggcatcggcagccagatgctacagaaaattgaaaacggaaggttcgccaagtac
agatactttgcgcacgccaaagtgaacgagtccgatttcctgatgatcaccaaaagggga
atctttttcgtgaccaaaggtacatttgggcagctgacctgcgagtggcagtatctgttc
gacgagttcaccaaggagcccatgatcgtggaggggaggcggcttcggatcgaggccaag
gagagagtgaagtctgtgtttcatgccaaagagtttgggaagataataaacttcagaagt
ccagaaatagccaagtgggttcttaccaagcttgaagacgccagggagagtctacacaaa
tactga
DBGET
integrated database retrieval system
