Oncorhynchus kisutch (coho salmon): 109896572
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Entry
109896572 CDS
T09179
Name
(RefSeq) AT-rich interactive domain-containing protein 2 isoform X1
KO
K11765
AT-rich interactive domain-containing protein 2
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109896572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109896572
03021 Transcription machinery [BR:
oki03021
]
109896572
03036 Chromosome and associated proteins [BR:
oki03036
]
109896572
Transcription factors [BR:
oki03000
]
Eukaryotic type
Helix-turn-helix
ARID
109896572
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109896572
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
109896572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARID
RFX_DNA_binding
FOXP-CC
TSTD2_N
Motif
Other DBs
NCBI-GeneID:
109896572
NCBI-ProteinID:
XP_020346414
Ensembl:
ENSOKIG00005003489
LinkDB
All DBs
Position
LG9:complement(3290174..3315615)
Genome browser
AA seq
1653 aa
AA seq
DB search
MANSTGKNVLDQRRKGLAFLDELRQFHRSRGSPFKKIPIVGGKELDLNALYIRVISLGGF
AKVSDKNQWSELGEDFNFPRSCSNAAFVLKQYYLRYLEKYEKVHHFGEDDDEVQPGNPKP
SLPIGAIPCSYNYQQHTVSDYLRQSYGLSMEFTAPCDYNKLVLSLLSGLPNEVDFAINVC
TLLSNESKHAMQLEKDPKLITLLLAHAGVFDDSLGSFSFVFGVDWKEQTSRDFMKFWKDV
VEDSEVRDLIWDKTSLTQVTDSTSGDERWGALFHPPRNLGIGDIEGQRVLQVGVILRNLS
FEEANVKLLAANRTCLRFLLLCAHCHFISLRQLGLDTLGNVAAELQLDPVDFRTTHLMFH
TITKCLMSRDRFLKMRAMEILGNLSKAEDNSVLICEYVDQESYREVISLLSLPDLMLLMS
SLEVLYLLAQLGEIPCSKIASVDRSIDLLVRLVSVDLHTFGPDALTAVRLMEHQAAGQSQ
VAEVRPQLVEQLPAPLQGAPIPAARVPVQSTPPPGIVELDGEKFTVQWLNAHFEVSGESS
VSRSEMYSEYLTTGSKMGRAGILASQGFLKCLRTIFPNHTVKRLEDTKPNAQAHIHVVGV
KRRAIPLPIQLYYQQQASPTPGPKHDVPVDPQASPSVPSLTVNLAAPQDGVPLPQAAQTV
PRLPLHHQASPHQHPHSAQQAKSADILKTAMVQSSIPTSGQVVQNHSPNMAQQLHHQQVM
APTGTPVTLFQQVQQGHIFTARVQGVPIAQRPPLPHTPSSLVPQALSQGTQQETAVFSAP
PHYAAVSAPCSSLQNFQVGGGQVFTIAGVSNAQGSRVTFQNIAPKPAPSQASGSPTTTHN
QQQQSSVVIVSPNPQQNQAYAPAIHQIVLANPSTMSGGQAIQLAGQSPTTSNPPPCPPIV
APLPQGLPSPSNTQIPMQGSASVSQMLSVKRQPQQLNPQQQFHPQQQFQIQAQPLPQQQQ
QPPQPTSTESSLIKQLLLPKRPSTPGGKLILPAPQVPPPSSTQRAPSPQVLYQVASQGQP
QPQQLNVQLVPSQLQSPGGPLQTVQLISTSSPATIIQGQAPGGQVTFTVVPNTGFTTSAS
AAAAQISQGAAAPGLPVVQTGNTLHGPPPPFRGDKIICQKEEEAKDATGLHIHERKIEVM
ENSSLADGAGTKTSNGDLAGADAPGAKLLNGRKCMDSSLPPYHSGNSQGACVNGPASESC
PTNGKQPSGPANPQEGHVDPKKALVNGVCDFERGDASTGSHLSKNIPNHFASKHLGNGEV
GPPQKLHGAPQEPSVPQQDTAKAEQAERLANGPQATGPFSNGPMGPGPNYTLPAFRQQLF
PTVTVNSQGATGPGTLPANGLSGEGRALKRPAEEDKGASVIPCKVGVRIITISDPNKAGC
SATMVAVPAGADPSTVAKVAIENATQQRNCSTIQASSSTLPPTVAQPVQAGSSSPNATLS
GPQAVVAPPEQTRKAGQNFKCLWQSCKRWFETPSRVFYHAATQHGGKELYPGQCLWEGCE
PFPRQRLSFITHLQDKHCSRDALLAALKLEQEPTQTQDSNQKTSKPQPVASSTPAPRAQK
AIVNHPSAALMALRRGSRNLVFRDFTDEKEGPMTKHIRLTAALTLKNIAKYSDCGRKLVK
RHESHLSVLALSNMEVSTTLAKCLYELTRSLQA
NT seq
4962 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattcgacggggaaaaatgtactagatcagcgaaggaaaggactggctttcctg
gacgagctgcggcaatttcaccgaagcagaggatcgccgttcaagaagattcctatcgtg
ggtgggaaagagctggatcttaatgctctctatatcagagtcatttcgttaggtggattt
gctaaggtttctgacaaaaatcagtggtctgagctgggtgaagattttaacttcccaagg
agttgttcaaatgcagcatttgttttaaaacagtactaccttcgatatttagaaaagtat
gaaaaagtccatcacttcggcgaggatgatgacgaggtgcagcctgggaacccgaaacca
tctcttccaattggtgcgatcccctgctcctataactaccagcaacacactgtatcagac
tatctccgccaaagctatgggctgtccatggagttcacggccccatgcgactataacaaa
ctggtgctctctctcctgtcgggcttgcccaatgaagtggacttcgcaatcaatgtttgc
actctcctctccaacgagagcaagcatgccatgcagctggagaaagaccccaaactcatc
acgctgctgctggcacatgcaggtgtcttcgatgactcactaggcagcttctcctttgta
tttggggtggactggaaggagcaaacctcccgggacttcatgaagttctggaaggatgtg
gtagaggattctgaagtcagggacctcatctgggacaagaccagcctgacacaagtgaca
gactctacgtcgggggatgagcgctggggcgccctcttccaccctccacgcaacctaggc
atcggcgacatcgagggtcagcgggtcctgcaggtgggagtcatcctccgcaacctctcc
ttcgaggaggccaacgtcaaactgcttgctgctaaccgcacctgtctgcggttcctctta
ctgtgcgcccactgccacttcatctccctacggcagctgggattggatacactcggcaac
gtggccgcagagcttcagttagatcctgttgactttcgaacaacccacctaatgtttcac
accatcaccaaatgtttgatgtcaagggacaggttcctgaagatgagggccatggagatc
ctgggtaatctgagcaaggcggaggacaacagcgtgctgatctgtgagtatgtggaccag
gagtcataccgggaggtgatcagcctgctgtcgctgcctgacctcatgctcctcatgtcc
tccctggaggtcctctacctgctggcccagctgggagagatcccctgcagcaagatcgcc
tctgtggacaggagcatagatctgctggtgcgactggtgtcagtggacctgcacacgttt
ggtccggatgctctgacggccgtgaggctgatggagcaccaggctgctgggcagagccag
gtggctgaggtgcggccgcagcttgtagaacagctgcctgctccgctgcagggcgcaccc
atcccagcagcaagagtccctgtccagtccactcctcctcctggtattgttgagctagat
ggggagaagtttacagtgcagtggctgaacgcccacttcgaggtgagcggcgagagctca
gtgtcgcgttcagagatgtactcggagtacctcaccaccggcagcaagatgggacgcgct
ggcatcttggcctcccaaggcttcctcaaatgtctacggaccatcttcccaaaccacaca
gtgaagcggcttgaggacaccaagcccaatgcgcaggcacacatacatgtggtgggggtc
aaacggagggccatcccactacccatccagctgtactaccagcagcaggctagccccaca
ccagggcccaaacatgacgtccctgtcgacccacaggcatcgccgtcagtccccagcctt
actgttaacctggcagcgccgcaggatggtgtacccctcccccaagcggctcagactgtt
cctcggctcccccttcaccaccaggcctcaccacatcagcacccccactcagctcagcag
gccaagtcagcggatatcctcaagacggccatggtccagagctccatccccacctctggc
caggtggtccagaaccacagccccaacatggcccaacagctccatcatcaacaggtcatg
gcgcctaccgggacccctgtcacactgttccaacaggtacagcagggccacatcttcaca
gcgcgggttcagggggtgcccattgcccagcggccgcccctgccgcacactccctcctcc
ttagtaccccaggccctctcccagggcacccagcaggagactgctgtgttctctgccccc
ccgcactacgccgccgtgtctgccccctgctcctcactgcaaaacttccaggtgggcggg
ggacaggtgttcaccatcgctggcgtgtccaacgcccagggctcccgtgtcactttccag
aacatcgcccccaagcctgcaccctcgcaggccagcggatcaccaacaaccactcataac
cagcagcagcagtccagcgtggtcatcgtcagccccaacccccagcagaaccaggcctat
gccccggctatccatcagattgttctggccaacccctccaccatgtctggtggccaggcc
atccaactggcaggacagtctcccactacttccaaccccccaccttgccctcccattgtc
gctccactaccccagggcctgccctctccttccaacacacagatcccaatgcagggctct
gcttctgtcagtcagatgctgtcggtcaaacggcaaccacaacaattgaacccccagcag
cagtttcacccccagcagcagtttcagattcaggcccagcccctgcctcagcagcaacag
cagcccccccagcctacctccacagagtccagcctgatcaaacagttactgcttccaaag
cggccctccacgccgggcggcaaactcatcctgcccgcaccccaggtgcctccccctagc
agcacacagcgtgcccccagcccacaggtgctctatcaggtggcctcacagggccagcct
cagccccagcagctcaatgtacagctggtccccagccagcttcagtccccaggggggcct
ctccagacggtgcagctcatctccaccagcagccccgccaccatcatccagggccaggct
cctggtggccaggtcaccttcactgtggtgcccaatacaggcttcaccacttcagcttct
gcagccgccgcccagatcagccaaggagccgctgcaccaggcctgccagtggtccagaca
gggaacaccctccacgggccaccgccgcccttcaggggggacaagataatctgccagaag
gaggaggaggccaaggacgccacgggtctgcacatccacgaacgcaagatcgaggtgatg
gagaactcttctctagccgatggggctggcaccaaaaccagcaacggagacctggcaggg
gctgatgctccaggggccaagctgcttaacgggagaaagtgcatggactccagtctacct
ccataccactcagggaacagccagggggcctgcgtcaatggaccggccagcgagagctgc
cccaccaacgggaagcagccctctggcccggctaacccacaggagggacacgtcgacccc
aaaaaggctcttgtcaacggggtctgtgactttgagagaggggacgcctccaccggttcc
cacttaagcaaaaacattccaaatcacttcgcttccaaacacttggggaacggggaggtg
ggtcctcctcagaaactgcatggggctccccaggagccctctgtaccccagcaggatact
gccaaagctgagcaggcagagcgccttgccaatgggcctcaggcaacaggccccttctct
aacggacctatggggccggggcctaactacactctgcctgctttcaggcagcagctgttt
cccactgtcactgtaaactcccagggcgccacggggccagggaccctgccggccaatggt
ttgagtggcgagggccgtgcgctcaagaggccggcagaggaggacaagggggcgtctgtg
attccctgtaaggtgggagtgaggatcatcaccatcagcgaccccaacaaggcgggctgc
agtgcgaccatggtggccgtgcctgctggagccgacccaagcacagtagccaaagtagca
atagagaatgccacgcagcagaggaactgctcgaccatacaggcatccagctctacgctt
ccgccaacagtggctcagcctgtgcaggctggcagctccagccccaacgccaccctttct
gggccacaagccgtggtggcaccccctgagcagaccaggaaagcgggacagaacttcaag
tgtctgtggcagtcctgtaaacggtggtttgagacgccgtctagggtgttctaccatgca
gccacgcagcatggtggcaaggagctgtacccaggccagtgcctctgggagggatgtgaa
cctttcccccgacagagactgtccttcataacccatctacaggataagcattgttctcga
gatgccctattggccgcactaaaactggagcaggaaccgacacagacgcaagactccaat
cagaaaacttccaagcctcagccagtggcaagcagcactccagcaccgcgagcacagaaa
gctattgtcaatcatccgagcgcagccctaatggcactacgcagaggctctcggaacttg
gtgttcagggacttcactgatgaaaaagagggaccaatgaccaaacacatacgactaact
gctgccttaacgctaaagaacatcgccaagtattcagactgcggtcgaaagttggtgaag
aggcatgagagtcacctctctgtgctggcactcagtaacatggaggtctccacaacgctc
gccaaatgcctttatgaactgactcgctctctccaggcttga
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integrated database retrieval system
