Oncorhynchus kisutch (coho salmon): 109896807
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Entry
109896807 CDS
T09179
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X8
KO
K14327
regulator of nonsense transcripts 2
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03013
Nucleocytoplasmic transport
oki03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109896807
03015 mRNA surveillance pathway
109896807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109896807
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109896807
mRNA cycle factors
P-body specific factors
109896807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
109896807
NCBI-ProteinID:
XP_020346765
Ensembl:
ENSOKIG00005016613
LinkDB
All DBs
Position
LG9:14982001..15001235
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AA seq
1281 aa
AA seq
DB search
MLAEGKRSLNMDEKEVSSFSNKEKDREGDRRPASSRDKVKDEAKMSGKKDIGKAAEEKRR
RLEEDKRKKEEKERKRKEEEKLKAEEEQRKKEEEEKRQQEEQERKVQEEEAKRQREEEAA
QLKEKEEGHQLHQEAWERHQCRKELRIRNQNAHEGRPEETFFSRLDSSLKKNTAFVKKLR
TLTEQQREALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFGLAFPPSEIINTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADF
LDENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKGKDKEEAAGKEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELA
KKLLDEQGKDEEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSN
RRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVADDLCSILKGDFRFHIRKKDQINI
ETKNKTVRFIGELAKFKLFSKTDTLHCLKMLLSDFSHHHIEMACTLLETSGRFLFRSPDS
HLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYICKLLY
KDLSKVTTEKVLRQMRKLPWQDPESKGYLICCMVNIWNIKYNSIHCVANLLAGLVAYQED
VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFG
VNPDGSPSPLDPPEHLFRIRMVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSVE
VWSAEHQFPIDIDYMISDTLELLRPKMKLCISLEDSTRHVTELEREFLVKLGLAMDGQKD
GRPSSAMGSEGEALDEDDEDDDEEGGADTEEQSGNESEMNEPEEEEGSENEEEEREEEEE
ENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAV
KVHQLDVAIPLQLKSQLKKGPGGPVCSGEGDGGISDTMQFVMLTRKGNKQQFKILNVPLS
SHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMASLAQRPAPANTNRERRPR
YQHPKGAPNADLIFKTGGRRC
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctgagggcaagagatcattaaacatggatgagaaagaggtgagctcctttagt
aacaaggagaaagacagagagggtgatagacggcccgcctcctcccgggataaagtgaag
gatgaggcaaagatgagtggcaagaaagatatcggtaaggccgcagaggaaaagaggagg
agacttgaggaggacaaaagaaagaaggaagaaaaggagcggaaacggaaagaggaggag
aaactgaaggcagaggaggagcagaggaagaaggaggaagaggagaagaggcagcaggag
gagcaggagaggaaagttcaggaggaggaggccaagagacagcgtgaagaggaggcagct
caactcaaggagaaggaagagggtcaccagctccaccaggaggcctgggagcgccaccag
tgccggaaggagctgcgcatccgcaaccagaacgcccacgagggccgtcccgaggaaacc
ttctttagccgccttgactccagcttgaagaagaacacggccttcgtcaagaagctgcgc
acgctcactgagcagcagcgtgaagccctctccaatgacttcggctcgctcaacctcagc
aagtacatcggcgaggcggtgggctcagtggtggaggccaagctgaagatctctgatgta
ggctgcgccgtgcatctgtgctccctctttcaccagcgctacgctgaattcgccccattg
ctcctccaggcctggaagaggcactttgaggcgcgcaaggaggagaaggcgcccaacgtg
agcaagctgcgcaccgacctgcgcttcatcgcagagcttaccatcgtgggcctgtttacg
gacaaggagggcctttcgctcatctacgagcagctgaagagcatcatcgggacagaccgc
gagacacacacgcatgtgtcggtggtcatcagcttctgtaagcactgcggggacgacatc
gcgggcctggtgcctcgcaaagtgaaggctgcacgggagaagtttggtctggccttccct
cccagtgagatcatcaacacggagaagcagcagcccttccagaaccttctgagggagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagttgcagaacatcgagagg
cagaacaggcgtatcctccactccaaaggggagctgagtgaggacagacacaagcagtat
gaggagtttgctacatcctaccagaagctgctggctaacacccagtctctggctgacttt
ctggatgagaacatgccagaacttccactggacaagactgtgcaggaagagcacggccct
ggcattgatatcttcacccctgggaagcccggggagtatgacctggaggggggcatctgg
gaggacgaggatgccaggaacttctatgagaacatggtggacctgaaggccttcgtcccc
gccatcctgttcaaagataacgagaaaggcaaggacaaagaagaggctgctggtaaagag
gctaaagatgcagcggccaccacagaggagttggagttggagctcgaggctctagacatc
gctgatgaccctctggagctggatggacctgacgaggcagagaacgaggcagagctcgcc
aaaaaactattggacgagcaaggtaaagatgaagaacaagaggatgaggaggcaagcacc
gggtcccacctgaagctcatcgtggacgccttcatccagcagcttcccaactgcgtcaac
agagacctcatagacaaggctgctatggatttctgcatgaacatgaacaccaagtcaaac
aggaggaagctggtccgggctctcttcaccgttcccagacaaaggttggatctgctgccc
ttttactcccgtctggtggccacccttcacccctgcatgtcagatgtggccgatgacctg
tgctccatactcaaaggagacttcaggttccatatccggaagaaggaccagatcaacatc
gaaaccaaaaataaaactgtacggtttatcggggagctggcgaagttcaaactgttctct
aaaacggacactctgcattgtctgaagatgctgctgtcagacttctcccaccaccacata
gagatggcctgcactctgctggagaccagtggacgcttcctcttccgatcccccgactcc
cacctccggaccagcgtccttctggagcaaatgatgcgtaagaagcaggcgcagcacctg
gatgctcgctacgtgaccatggtggagaatgcctactactactgcaaccccccgcccatg
gagaagactgtcaggaagaagaggcccccgctgcaggagtacatctgcaaactgctctac
aaggacctctccaaggtcaccacggagaaggtgttgaggcagatgcgtaaactcccctgg
caggacccagagtctaaaggctacttgatctgttgcatggtcaacatctggaacatcaag
tacaacagcatccattgtgttgccaacctgctggccggccttgtggcctaccaggaggac
gtgggcatccacgtggtggatggggtcctggaggacatccgcctgggaatggaggtgaac
cagcccaagttcaaccagcgtcggatcagcagtgccaagtttctgggggagctctacaac
taccgcatggtggagtcagcggtcatcttccgcaccctcttctccttcatctcgttcggc
gtgaacccggacggcagccccagccccctggacccccccgagcacctgttccgcatccgc
atggtctgcaccctgcttgacacctgcggacagtactttgaccgcggctccagcaagagg
aagctggactgcttcctcatctacttccagaggtatatctggtggaagaagagtgtggag
gtgtggagtgcggagcaccagttccccatcgatattgactacatgatcagtgacaccctg
gagcttctccggcccaagatgaagctctgcatctccctggaagactccacacgacacgtc
accgagttggagagggagttcctcgttaaactgggactggccatggatggacagaaggac
ggccggccctccagtgccatggggagtgaaggcgaggctctagacgaggatgacgaggat
gacgacgaagagggaggggcggacacagaggaacagtctggcaatgagagcgagatgaat
gagccagaggaagaagaagggtctgagaatgaggaagaggagcgggaggaagaggaggag
gagaacactgactatctgaccgactccaacaaggagaacgagacggacgaggagaacaat
gaggtgaccatccgtggtggcggtctgaagcatgtggcatgtgctgaggatgaggacttc
atccaggctctggacaagatgatgctggagaacctgcagcagcggagcggggaggcggtg
aaggtgcaccagttggacgtggccatccccctgcagctgaagagccagctgaagaaaggc
cctggaggacccgtctgctctggagagggagacggaggcatctcagacaccatgcagttt
gtcatgctcacgcgcaagggcaacaaacagcagtttaagatcctgaacgtgcctttatcc
tcccacctggctgccaaccacttcaaccagcagcaggcagagcaggaggagaggatgagg
atgaagaagctgactctggacatcaacgagagacaggagcaagaagactaccaagaaatg
atggcgtctctggcccagcggcccgctcctgccaacaccaaccgggagcggcgcccgcgc
taccaacaccccaaaggggcacccaacgccgacctcatcttcaagaccggaggaaggaga
tgctga
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