Oncorhynchus kisutch (coho salmon): 109896848
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Entry
109896848 CDS
T09179
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109896848
Membrane trafficking [BR:
oki04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
109896848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_1
TPR_7
TPR_8
SH3_1
TPR_10
TPR_NPHP3
SH3_9
TPR_4
Motif
Other DBs
NCBI-GeneID:
109896848
NCBI-ProteinID:
XP_020346841
Ensembl:
ENSOKIG00005003694
LinkDB
All DBs
Position
LG9:complement(21909720..21939461)
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AA seq
1351 aa
AA seq
DB search
MSNAEQEVEPVPVAVGNGVDTSRRYRRKLSADDHKHHHHDPVKIETITRSRKMERSFSRE
AGSVRGTMSTSEDSFPTALPMLLAIVEGPDRHPADEGSQEVLRGKLCLLEADSAEVNALF
TELSARLVTINSEENVIFVAFKTFEEIWKFTTYYTMGFLGQCMENLLLDQDFWLSSMDQK
NVGIEISIQEDTLNLMYKGILMQEGSFFASCSSTQMFDSSTSGSDLYLEQGDIALFEPPF
LGSGWTVLSLGDGARGTKPKPALEPVIPFHQWFLKSCAENILVGSGKPACDFLYQFATGS
CIATVEYDAGGPDELSLEQGDHILIVGLLVSCFDWFTGRLERTGEVGLVMTTLVKPADDT
LCESADIFLDQEERLFFYLKEEQIKEETIALLKKISQNDVGSVYKLDLIDQPDSPKEPTQ
NGSQGNMDAHQQAELKRKIEEILQEKKEKVPCATGMTNGSLEDHSVSSKTTLPSGPHFTV
HPVEEGTITNQEKLLPLLSFLGGSDYKPDFGTLYGQTPELLLATFNGHSDDIDELVAYLG
IARETARKKRLHWSQSRLCLLLGKLCAGSSKFSQARVYFEEALSIPRDGFTDMLMLANIY
VNLAVIYLMQKNTEKYFALSERIAALLMGIPDCASTVEKDSEVLKFILKKAVLAHNKMAE
ARACFLLAKLHWRRGEGADAVPFLERLLVLSAEPAGVRSIRPSHGYLSLGRLYSQLSLPH
LCVSSARRATMHPSARLADCLNGMGLVLENTTRLYGIRKQEDTIPAQVALYLSRSLSFTG
ELAGVGGNGDHTLSQALTLCLSQLFQKHGKLGRAVRSMHTLIDNHCGPSSSSGATNSPER
ISALVWLAWLHICDSQPEVSLDVLDSVLASMPEHCTTPQEGLVHNMRGVALRCTGDLRRA
AESYQAAIYVCEEFEDRANWAVAQANLGLLSLKAGAKGLAERHLTEAVELFSELGGEEHE
VNFITVLLELGQHCVNQRFLERGKIYFEWALLMAIKSNHLDSQLSATRRLCHLYGAVCSD
EAQCIIYNEHQLAILATRGDRGQEGEVLETISQLYLSLGTERARRSALDYTKRSLGIFID
LGRKEKEAYAWLQAGKIYQMLGQTELVDLYVQVAQDVGLSTGDTHFILQLLEAVGDVFFN
LNQEREKAVCFYRDRALPIAVRTSSTEARLRLSNKLVELLLQLKLYGEAVEYAQAALDIS
VTLGNRLNERVAFHRLATLYHCLGQFELAEHYYLKTLSLCPTPLEFDEETLYYVRVYQTL
GDIIFYDLKDPYDAAGYYHLALAAAMDLGNKKSQLQLCTRLATIYHNFLVDRELSLFFYQ
KARAFASDLNVRRINLSPDQNFSSMSQYKST
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatgcggaacaggaggtagaacccgtcccggtggcggtgggtaacggagttgac
acgagtcgccgttaccggagaaagctctcagcagatgaccacaagcatcatcaccatgat
ccggtaaaaattgagactatcacccgaagtagaaaaatggagaggtcattctccagagaa
gctggcagtgtaaggggaaccatgtcaacgtctgaagacagcttcccaacagctctaccc
atgttgctggccatcgtggaggggcccgacaggcaccctgcagacgaggggtctcaggaa
gtgctgcgggggaaactctgccttctggaggccgacagcgcggaggtcaacgctctcttt
acggaactctctgccaggctggtcaccatcaacagtgaagaaaacgttatattcgtcgca
ttcaaaacattcgaagagatatggaagttcaccacatattacacaatgggctttctgggt
cagtgcatggagaacctgctcctagaccaggatttctggttgagctctatggaccagaag
aacgtgggcatagagatctctatccaagaggacactctcaacctaatgtacaaaggcatt
ctcatgcaagagggttccttcttcgccagctgcagttccacccagatgtttgacagctcc
acctctggtagtgacctctacctggagcagggggacatagccctgttcgagcccccgttc
ttggggtcggggtggactgtactgtccctgggggatggggcccgggggaccaagcccaaa
ccagccctggagcccgtcatacccttccaccaatggttcttgaaatcctgtgcggagaac
atcttagttggtagtggcaagccagcatgtgacttcctctaccagtttgccacaggctcc
tgcattgccactgtggagtatgacgcaggaggaccagatgagctgagcctggagcagggt
gatcacatcctcattgtgggcctgttggtgtcttgcttcgattggttcactggcaggctg
gagaggacaggagaggtgggactggtgatgacaacactggtcaagccagctgatgatacc
ctttgtgagtcggcggacatattcctagaccaagaagaaaggttatttttttacctgaaa
gaagagcagatcaaagaagaaactattgccttgctgaagaaaatctcccagaatgatgtt
ggatccgtctacaaacttgatctgattgatcaaccagattctccaaaggaaccaactcaa
aatggttcccaaggaaacatggatgctcaccaacaagcagaactgaagaggaagatagaa
gagattctacaagaaaagaaggagaaagtgccttgtgcgactgggatgacaaacggatct
ctggaggaccacagtgtgtcctctaagactacattacccagtgggcctcacttcaccgtc
cacccagtagaggaaggcaccatcaccaaccaagagaaactccttcctcttctatccttt
ctgggcggctctgactacaagccagattttggcaccctctacggacaaaccccagaactg
ctccttgccactttcaacggccactcggacgacattgacgaattggtggcatacttaggc
atagccagggaaacggccaggaagaagcgtctccattggtcgcagagccgcctctgtttg
cttttggggaaactctgcgcgggaagttcaaaattctcccaagctcgagtctacttcgag
gaggccctcagcatccctcgagatggattcacggatatgctaatgctagctaacatctac
gtaaacctagctgtgatctatctcatgcaaaaaaacacagagaagtactttgctttgtca
gagcggattgctgcattgcttatgggtatccctgactgcgcctctactgtagaaaaagac
tctgaagttctcaagttcatcctgaagaaagcggttctcgctcataacaagatggctgaa
gcacgtgcttgtttccttctagcaaagctccactggaggcgaggcgagggggcggatgct
gtcccgttcttggagagacttctggttctctcggcagagccagcaggtgtccggagcatc
aggcccagtcacggctacctgagcctggggagactgtacagccagctctccctcccccat
ctctgtgtcagctcagccaggagagccacaatgcatccgtccgctaggctagccgattgt
ctgaatggaatggggctagttctggagaacacaaccagactctatgggatccggaagcag
gaagacaccattccagctcaagtggctctgtatctgagccggtcgctctctttcactggg
gaattagctggagtcggtggcaatggtgaccacactctaagccaggcactcacactctgt
ctatcccaactgtttcagaaacacgggaaattaggacgcgcggtgcgctccatgcacact
ctcatagacaatcattgcgggccgtcatcatcatcgggcgccactaacagccctgaacgc
atcagcgccctcgtgtggctagcctggctgcacatctgtgacagccaaccggaggtatca
ctagatgttctagactcagtgctagcctccatgccagaacactgcactactccacaggaa
ggattggtccacaacatgaggggtgtggcccttcgatgcacgggagacctgcggagggcg
gcagaaagctaccaggcggccatttatgtgtgtgaggagtttgaggacagggccaactgg
gcggtcgcgcaggctaacctggggttgctgagtctgaaggctggggctaagggtctggcg
gagaggcatctcacggaagccgtggagctgttctcagagctgggtggagaggagcatgag
gtgaactttataacagtgctgctggagctgggacaacactgtgtgaaccagagattcctg
gaaagagggaagatctactttgagtgggctctgctgatggccattaagtcaaaccattta
gacagtcagttaagtgcgacgcggcgtctgtgccacctgtacggagctgtatgttctgac
gaagctcagtgcataatctacaacgaacatcagcttgccatactggcgacccggggagac
aggggacaggagggggaggtgctggagaccatcagccagctatacctcagtctggggaca
gagagggctaggcggtcggctctggactacaccaagcgtagcctgggtatctttatcgac
ctgggccggaaggaaaaggaggcatatgcctggctgcaggctgggaagatataccaaatg
ctgggccaaaccgaactggtggacctctatgtacaggtggcccaagatgtgggcctgagt
acaggagacacacactttatcctacagctgctggaggcagtaggggatgtcttcttcaac
ctcaaccaggagagagagaaggctgtctgcttctatagggaccgtgccctgcccatcgct
gtgaggaccagcagtacagaggccagactaaggctgtctaacaagctggtggagctgcta
ctgcaactgaagctgtatggggaggccgtggagtacgcccaggccgcccttgacatcagt
gttacattgggaaatcgtctaaatgagcgcgtggccttccaccggttggccaccctgtac
cactgtctgggtcagtttgaactggctgaacactactacctgaagaccctctccctctgc
cccacgcccttggagtttgatgaggaaaccctgtactacgtacgagtctatcagacgcta
ggggacatcatcttctatgacctgaaggacccctacgatgccgcggggtactaccacctg
gcgctggcagcagccatggacctcggcaacaagaagtcccagctccagctttgcacacga
ttggctacgatctaccacaactttctggttgaccgggagctctcactcttcttctaccag
aaagcgcgagcgttcgcctcagacctcaatgtacgccgcatcaacctctcgcccgaccag
aacttcagtagtatgtcacagtacaagtccacttga
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