Oncorhynchus kisutch (coho salmon): 109896875
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Entry
109896875 CDS
T09179
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109896875
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109896875
09142 Cell motility
04820 Cytoskeleton in muscle cells
109896875
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oki04147
]
109896875
00536 Glycosaminoglycan binding proteins [BR:
oki00536
]
109896875
Exosome [BR:
oki04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109896875
Glycosaminoglycan binding proteins [BR:
oki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109896875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109896875
NCBI-ProteinID:
XP_020346888
Ensembl:
ENSOKIG00005045991
LinkDB
All DBs
Position
LG9:complement(20479975..20564950)
Genome browser
AA seq
1689 aa
AA seq
DB search
MNKNLKSLRNLAVGLVLVTLCIVVQESESAACHGCAAGSKCDCSGVKGGKGERGFPGLQG
QPGVPGFPGPEGPIGGRGEKGGDGPSGPSGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPG
PRGTAGCNGTKGERGFPGSPGFPGLEGRSGPPGLPGQKGDLGDVISNDRFGQKGGVGLPG
LPGVPGNTGPAGLSGPVGPPGPRGYEGRSGPPGPPGPKGNMGLNFQGPKGDKGDPGLQGP
PGPPGQVGEQKRPTELEIQRGEKGDQGLPGPAGDPGYTGPPGVSGGSKGEKGEPGEAGKR
GKPGKDGDPGPAGFPGSKGDLGGPGLPGRDGDRGDKGDRGYPGPPGVVINGQTGARVGPK
GEPGFPGSSGRKGDRGQPGLSGPPGQPGTPGTGGVGQPGSPGFPGERGQKGDEGQPGISL
PGPPGRNGTPGLQGPPGPPGAAGVSTGGGNCLEGAPGLPGQQGDRGFQGETGQKGDKGET
CVNCFSRGNSIAGAPGPPGPPGFPGGPGGPGAKGDRGYPGGPGPSGSSGLPGPQGAPGFP
GEKGDPGEAIAVDGVRGDKGDTGFPGPPGLPGLDGGPGRNGVPGAPGPKGTSGSLLVKGE
RGPPGEPGLQGLPGDRGGPGSPGFGPQGPPGEKGVQGVSGRTGTPGSPGTKGEPGQTIAE
KGLPGPRGQDGDPGLPGNPGNPGGPGQPGFPGLPGAKGDPGLSGIGLPGPPGAKGFPGSS
GVPGGPGGPGRPGVDGLPGEPGGPGAKGEPGFGLPGPQGPPGFPGPKGLPGPKGDSGFPG
NPGSPGRSGFDGGPGAKGDSGIPGISGARGPPGSPSIGSQGIPGPIGPPGPMGSPGYSGA
NGEKGDPGSPGLDIPGLPGDRGSPGFPGNPGGVGPQGNPGGPGRDGLPGLPGGKGDMGVM
GAPGPLGSPGNPGAPGFPGPKGDDGFPGRPGGPGGSGLKGDRGEPGIAGLPGPSIPPQEL
KGGKGEPGAPGLGGLPGQKGIPGLPGDAGIPGQDGRPGLPGPQGPKGDAGIPGGSGSPGA
PGAKGNMGEMGFPGPTGAKGTPGQSGRSGGPGSSGASGFPGAKGEPGSPGFGSPGATGPK
GEPGQSGFPGQNGVKGTPGTPGLPGFPGGPGAKGDPGLPGFQGSPGIPGPKGLDGIPGNP
GLSGPPGRPGENGRAGSPGFPGDKGQAGRDGIPGPAGVKGDPGLPGFGGPGSPGLPGLPG
AKGDLGVPGSSGSPGFPGQKGEMGFSGLPGSPGSVGPPGAPGVALQGPKGNAGPPGPPGR
GGPEGPPGPPGSEGPRGPVGSGGTKGEKGISGIPGSPGFPGAKGDFGSPGFPGNAGIPGA
KGLKGDIGLPGVPGFPGPKGDSGIPGPSGLPGDPGDGGPAGPPGDPGFAPAPIVLKGERG
SPGPSGLPGGRGATGPPGLEGLSGQPGQPGDSGPEGPPGFSGASGRKGDPGPAGQPGERG
YPGPPGSDGLQGPPGPSGSASVAHGFLITRHSQGEDVPLCPEGTSLIYDGYSLLYVQGNE
RAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPTPMPMTMAPITGEG
IKPYISRCAVCEAPAMVIAVHSQTIQIPTCPSYWEPLWIGYSFMMHTSAGAEGSGQALAS
PGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVDQSEMFRKPQSETLKAGNLRTRVS
RCVVCMKRT
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacttgaagagtctgcgaaatctcgcggtggggttggtgctcgtaaccctg
tgtatcgtggtccaggagtcggaatcagcggcctgtcatggctgtgcagcaggatcaaag
tgtgactgcagcggggtaaaaggaggcaagggcgagaggggtttcccagggctacagggt
cagccaggcgtaccagggttccccggacctgaggggccaatcggaggcaggggagagaag
ggtggtgacggaccttcagggccatccggtccaaaaggaattaggggacctcctggactg
cccgggttcccaggaacaccaggaattccaggtctcccaggacaggacgggcccccgggc
ccaaggggaactgcaggctgcaacgggaccaagggtgagagaggattccctggaagtcca
ggattccccggactggagggccgatcgggtccacctggtctgccgggacaaaagggagac
ctaggcgatgtcatctccaatgaccgcttcggacagaaaggaggagtaggcctaccaggt
ttgcctggagtccccggtaacaccggccctgcgggattgtcgggccctgtcggtccacct
ggccccagaggttatgagggtcgttccgggcctcctggtcctcccggtcctaagggtaac
atgggattgaacttccaaggtcccaaaggagacaagggggatccaggcctgcaggggcct
cccggtccacctggacaggtcggggagcagaagagacccaccgagttagagatccagaga
ggagagaaaggtgatcaaggtttacctggtccagccggtgatcctggttatactggtccc
cctggtgtatctggaggttcgaagggagagaaaggagagcctggagaagcaggcaaacgc
ggaaaaccggggaaagatggcgacccaggtcctgctggattccctggtagtaaaggagac
ctaggcggcccaggtctgccaggtcgggatggtgacaggggggacaaaggtgaccgtgga
taccctggacctccgggcgtggtgattaatggtcagacaggagcacgtgtggggccaaaa
ggagagcctggtttccccgggtcatcaggaaggaaaggagacagaggacaacctggtctc
tcaggtcctccaggccaaccaggaaccccaggtactggaggtgtaggccaacccggttcc
ccaggcttccctggagagaggggccagaagggagatgagggccagccaggcatctccctc
cctgggcccccaggacgaaatgggacccctgggcttcagggaccaccaggccctcccggg
gctgcaggggtctccacagggggcggtaactgtttagaaggggcccccggcttaccagga
caacaaggagacagagggtttcaaggagagactggacagaaaggtgacaagggagaaacc
tgtgtgaactgtttctcacgtgggaactccatcgctggagcaccagggcctcccgggcct
cccgggttcccaggtggaccaggaggaccaggggctaaaggtgacagaggatatccaggt
ggcccagggccctcaggttcttctggtttgcctggtccccagggtgcacctggtttccca
ggagagaagggtgacccaggtgaggctattgctgtggatggggtgaggggtgacaaggga
gacacagggttccccggaccccctggcctgcctggtctggacggaggacctggtcgcaat
ggagttcctggagctcctggacccaaaggaacatctggttctctgttagtgaagggtgag
cgagggcctccaggtgagcccggtctgcagggtctcccaggtgacaggggtggccctgga
tccccaggcttcggcccccaggggccccctggagagaagggtgttcagggcgtctcaggg
agaacgggaacacctggatcaccaggcactaaaggtgagccgggtcaaacgatagcagag
aagggactcccaggacccaggggacaggatggagaccccggtcttcctggaaacccaggc
aaccccggcgggccaggacagcccggtttccccggattaccaggtgccaagggtgacccc
ggcctctccggcattggactgccaggaccccccggcgctaaaggattcccaggctcatct
ggtgtgccaggtggtcccgggggtccaggaagaccaggagtggacggcctccccggtgag
ccaggtggacctggagctaagggagagccgggatttgggctgccaggtccccagggccct
ccaggcttccctggacccaaaggattacctggacccaaaggagactccggtttccccggc
aaccccggctcgcccggacgttctggcttcgacggtggccctggtgccaaaggtgactct
ggtatccctggtatatccggagcccgtggccctccaggttcaccctccatcggctctcag
ggcatccccggccccattggacccccaggacccatgggctctccaggatactcaggcgcc
aacggtgagaagggagacccgggttctcccggcctggacattccagggttgccaggcgac
agaggaagtcccggtttccccggcaaccccgggggagttggaccacagggtaaccctggt
ggccctggccgagacggactgcctggcctgcctggtggtaaaggagacatgggtgtgatg
ggagctcctggacctctgggatcccctgggaaccccggagcccccggcttccctggacct
aaaggtgacgatggtttcccagggcgaccaggtggtcccggcggttcaggtctgaaggga
gacaggggagagcccggtatcgcgggactcccaggacccagcattcctccccaggaactg
aagggtgggaagggagaaccaggcgcaccaggtttaggaggactaccaggtcaaaagggt
atccctggtctccctggagacgctggtataccaggacaggacggacgacctgggttgcca
ggacctcaaggtcccaaaggagacgcaggtatccctggaggatcaggctcaccaggagcc
ccaggagctaaaggcaacatgggagagatgggcttcccaggacccacaggggcgaaagga
actccgggtcaatcaggtcggtcgggtggacccggtagttcaggagcatcagggttccct
ggagctaagggagagcccggttcccctggctttggttccccaggagctacaggtcccaag
ggtgagcccggtcagtcaggattccccggacaaaacggagtaaaaggaactcccggaaca
ccaggtcttccagggtttcctggcggccctggcgccaaaggtgaccccggcctcccagga
ttccaaggttctcccgggattcccgggccgaagggtctggatggtatccccggtaacccc
ggtctcagcggaccacccggccgaccgggagagaacggccgtgccggatcacctgggttt
ccaggggacaagggtcaggcgggtcgtgacggaatccctggaccagcgggagtcaaagga
gacccaggtcttcctggttttggtggccccggttctcctggtctcccaggattaccaggt
gctaagggagatcttggcgtccctggttcttccggtagccctggcttccctggtcagaag
ggagagatgggtttctctggcctgcctgggtcccctggcagcgttgggccccctggcgca
ccaggtgtggccctccagggtcccaaaggtaacgccggcccccccggaccccctggaaga
ggaggtcccgaaggtcctccaggtcctcctggctccgaaggtccccgtggccctgtcggc
agcggagggaccaaaggtgagaagggaatttccggaattcctggatcgcctggtttcccc
ggagcgaagggagatttcggatcgcccggattcccgggtaatgctggcattcctggtgcc
aaagggttgaagggagacatcggactgcctggagttcccggattcccaggaccaaaggga
gattctggaatccctggaccatctggtctccctggagaccccggagatggaggccctgct
ggacccccaggtgacccaggttttgctccagcccccatcgtgctgaagggagagcgtggc
tcccctggcccttcaggtctaccaggcggccgtggcgccacaggaccccccgggctggag
ggactctcaggtcagcccggtcagccaggagactccggtcctgagggacccccaggattc
agtggagcctccggccgcaagggagacccaggacccgccggacagccaggtgagcgtgga
tatcccggtccccctggttcagatggcctgcagggccccccaggtccatctggatctgcc
tctgtggcgcacggcttcctgatcaccagacacagccagggcgaggacgtccccctctgc
ccagagggcaccagcctcatctacgacggctactctctgctctacgtacagggcaacgag
agggcacacggacaggacctgggaactgctggtagttgcctgcgtcggttcagcaccatg
ccattcatgttctgtaacatcaataacgtgtgtaactttgcctcccgtaacgactactcc
tattggctgtccacacccacgcctatgcccatgactatggcccccatcactggagagggc
atcaaaccttacatcagcaggtgtgcagtgtgtgaggcccctgccatggtgatagctgta
cacagtcagaccattcagatccccacctgccccagctactgggaaccactgtggatcgga
tactccttcatgatgcacactagtgctggtgctgagggttcgggtcaggctctggcctct
cctggctcctgtctagaggaattccggagcgctcccttcatcgagtgccacggtcgagga
acctgcaactactacggcaactcctacagcttctggctggccaccgtggaccaatcagaa
atgttcaggaagccacagtcggagacgctgaaagcaggtaacctgcggacgcgcgtcagc
cgctgtgtggtctgtatgaagaggacgtaa
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integrated database retrieval system
