Oncorhynchus kisutch (coho salmon): 109897088
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Entry
109897088 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03020
RNA polymerase
oki03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109897088
09124 Replication and repair
03420 Nucleotide excision repair
109897088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109897088
03400 DNA repair and recombination proteins [BR:
oki03400
]
109897088
Enzymes [BR:
oki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109897088
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109897088
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109897088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
109897088
NCBI-ProteinID:
XP_020347207
Ensembl:
ENSOKIG00005010460
LinkDB
All DBs
Position
LG9:complement(33247109..33271903)
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVDQQEHDSEDITKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDVILGLDPK
FSRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWST
FRMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
AIRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMG
HDVTRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAV
EFQNMATLKPSNKAFEKKFRFDCTNERALRRTLQEDVVKDVMTNAQVQSALEREYEKMKE
DREILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLV
IVNGEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQSIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTV
FLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPD
FDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEEGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LNHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLME
ASSHGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGM
FFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYXPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPSSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS
PSYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPLSPGYSNPSPSFTLTSPAISPDDSDEENN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcggtcacagaagggggaatcaag
taccccgagaccacagaaggaggacgtcctaaacttggtgggctgatggaccccagacaa
ggggtcatcgaacgatccggaaggtgtcaaacgtgtgcaggcaacatgacagaatgcccg
ggccacttcggccacatagagctggcgaagcctgtcttccacgtgggtttcgtcaacaag
atcatgaaggtcctccgatgtgtctgctactcgtgctccaagcttctggtcgacacgaat
aacccaaagatcaaagacatcctgcagaagtccaaggggcagcccaggaagcgtctgacc
cacgtgtacgacctgtgtaaaggcaagaacatctgcgagggcggagaggagatggacaac
aagtttggagtggaccagcaggagcacgacagtgaggacatcactaaggagaaggggcac
ggtggctgtggacgctaccagccgcgtatccgccggtcgggcctggagttgtacgccgag
tggaagcacgtgaacgaggactcgcaggagaagaagatcctgctgagcccagagcgcgtc
tacgagatcttcaagcgtatctcggacgaggaggatgtcatcctgggcttggaccccaag
ttctcccggcccgagtggatgatcgtcacagtactccccgtgccgccactggctgtccgg
cccgccgtcgtcatgcagggctctgctcgtaaccaggacgacttgacacacaagctggcc
gacatcgtcaagatcaacaaccagctgcggcggaacgagcagagcggcgcggcggcccac
gtcatcgccgaggacgtgaagctgctgcagttccacgtggccaccatggtggacaatgag
ctgccaggcctgcccagggcgatgcaaaaatcgggccgcccacttaaatccctcaaacag
cgtctgaaggggaaggaggggcgagtccgaggtaacttgatggggaaacgtgtggacttc
tccgcccgaaccgtcatcacccccgaccccaacctccagatcgaccaagtgggtgtcccg
cgctccatcgcagccaacatgaccttcccagaaatcgtcacaccctttaacattgacagg
ttacaggagttggtgcgcagaggcaacagccagtaccccggagccaaatatatcatccgc
gacaacggggacagaatcgacctgcggtttcaccccaaaccaagtgaccttcacctgcag
attggctacaaggttgaaagacatatgtgcgacggtgacatcattatcttcaacagacag
cccacgctacataaaatgtctatgatggggcacagagtccgaatcttgccctggtccacc
tttcgaatgaacctcagtgtaaccaccccgtacaatgctgactttgacggggatgagatg
aacctgcatctaccccagtccctggagacgagagctgagatccaggagcttgccatggtg
cctcggatgatcgtcaccccccagtccaacaggcccgtcatgggtatcgtgcaggacacc
ctcaccgcggtgcgcaagttcaccaagagggatgtcttcctagagcggggcgatgtgatg
aacctcctgatgttcctgtccacgtgggacggcaaagtgccccagccagccatcctgaag
ccccggccactctggacgggcaagcagatcttcagcctcatcatcccgggccacatcaac
gccatccgaacacacagcacccatccagacgaggaggacagtgggccatacaaacacatc
tcccctggggacaccaaggtgatagtggagaacggagagctgatcatgggcatcctgtgt
aagaagtccctgggtacctctgctggctccctggtccacatctgtttcctggagatgggc
cacgacgtcacccgcctcttctactccaacatccagacggtggtcaataactggctgctc
attgagggtgcctctattggtattggtgattctattgctgacgcaaagacttaccttgac
attcagaacaccatcaagaaggccaagcaggatgtaatagaggtcattgagaaggcccac
aacaacgagttggagcccacccctggtaacacgctgaggcagacctttgagaaccaggtg
aatcgcatcctgaatgacgcccgtgacaaaacgggttcctccgcccagaagtccctgtct
gagtacaacaacttcaagtccatggtggtggccggttccaaaggctccaagattaacatc
tcccaggttattgctgtggtggggcagcagaacgtggagggtaaacgtatccccttcggc
ttcaagcaccgcacgctcccccacttcatcaaggatgactacggccctgagagcagaggc
ttcgtggagaactcgtacctggccggcctcacgcccactgagttctttttccacgccatg
ggaggcagagaggggcttattgacacggctgtgaagaccgccgaaactggttacatccag
cgtcgtctgatcaagtccatggagtctgtgatggtgaagtacgacgccaccgtgaggaac
tccatcaaccaggtggtgcagctgcgctacggagaggacggcctggccggggaggctgtg
gagttccagaacatggccacgctcaaaccctccaacaaggccttcgagaagaagttcagg
tttgactgcaccaatgagcgggcgctgcggcgcaccctgcaggaggacgttgtgaaggac
gtgatgaccaatgcccaggtgcagagtgctctggagagagagtatgagaagatgaaggag
gacagagagattctgagggccatcttccccactggggacagcaaggtggtgcttccatgc
aacctggccaggatgatctggaacgcccagaagatcttccggatcaacccccgcaccccc
acagacctcaacccccttcgagtggtagagggtgtccaggagctgagtaagaagctggtg
attgtgaatggcgaggaccacctgagcagacaggcccagcagaacgccacgctgcttttc
aacatccacctgcgctccacgctcagctcccgacgcatgacagacgagttccgactgagc
actgaggcttacgactggctactgggggagatcgagagcaagttcaaccagtctattgcc
cacccgggtgagatggtgggggcgttagcagcccagtcgctgggagaacccgccacccag
atgaccctgaacaccttccactacgctggtgtgtcggccaagaacgtcactctgggcgtg
ccgcgtctcaaggagttgatcaacatctccaagcggcccaagaccccctccctaaccgtg
ttcctgctgggccaggcggcccgcgacgccgagagggccaaggatatcctctgtcggctg
gaacacaccaccctcagaaaggtgacggccaacacagccatctactacgaccctaacccc
cagagcacggtggtgacggaggaccaggagtgggtcaacgtctactatgagatgcccgac
tttgacgtgactcgcatctccccctggctcctccgcatcgagctcgaccgcaaacacatg
actgaccgcaagctgaccatggagcagatcgcagagaagatcaatgcaggtttcggagat
gatctgaactgtatcttcaatgacgacaacgccgagaagctggtcttgcgaattcgcatc
atgaacagtgacgagaacaagttccatgaggatgaggaagtggtggacaagatggacgac
gatgtgttcctgaggtgcatcgagtccaacatgctgacggacatgacactgcagggcatc
gagcagatcagcaaggtgtacatgcacttgccccagaccgacaacaagaagaagatcatc
attacagaggagggagagttcaaggccctgcaggagtggatcctggagacagatggcgtg
ggactgatgagggtcctcagtgagaaggacgtggaccctgtcaggaccacctccaacgat
attgtagagatcttcacggtactgggtattgaggctgtacgtaaggcgctggagagggag
ttgaaccacgtcatctcctttgacggttcctacgtcaactaccgccacttgtcgttgctt
tgcgacaccatgacgtgccgcggtcacctgatggccatcacacgtcatggcatcaacaga
caggacacgggacctctcatgaagtgctcctttgaggagacggtggatgtgctgatggag
gcgtcatcccacggggagagtgaccctatgaagggtgtgtctgagaacatcatgctgggc
cagctggccccctgcgggacgggctgcttcgacctgctgctggacgctgagaagtgcaaa
tacggcatggagatccccaccaacatccccgggatcagcgtggctggacccaccggaatg
ttctttggctcggcgcctagccccatgagtggcatgtcccctgccatgaccccctggaac
actggagccacccccgcctatggtgcctggtcccccagcattggtagcgggatgactccc
ggagcagcaggcttctctcccagcgcagcgtccgacgccagtggcttctctccgggctac
tccccggcctggtcccctacccctggatctcctgggtccccggggccagcgagcccctac
atcccctctccaggaggtgcgatgtctcccaactactcgcccacctccccggcctatgag
ccccgctctcctgggggatacaccccccaaagcccgggctactccccaacctccccctcg
tactccccaacctccccctcgtactcccccaccagccccaactacagccccacctccccc
tcgtactccccaacctccccctcatactccccaacctccccctcatactccccaacctcc
cctagttactccccaacctccccctcctactccccaacctccccctcgtactctccaacc
tcccctagttacntccccacgtccccctcttacagccctacatccccaagctacagccct
acgtccccaagctactcccccacctcgcctagctattcccccacctcaccctcctactcc
cccacctcaccctcctactcccctacctcaccctcctactcccccacctcaccctcctac
tcccccacctcaccctcttactcccccacctctccaagctacagcccctcttcacccaac
tacacccccacctccccctcctactcccccacctccccctcctactcccccacctcccca
aactacacccccaccagccccaactactccccgacctccccctcttattcccccacctcc
ccgtcctactctccctccagcccgcgcttcacaccccagtcgcccacctacacccccagt
tctccctcttacagccccagctccccctcctactcacccacctcacccaaatacacccct
acctccccctcatactcccccagctctccagagtacacccccacctcccccaaatactcc
cccacctcgcccaagtactctccgacctctcccaaatactcacccacctccccaacttac
tcaccgacgacgcccaagtacagccccacttcgcccacctactcacccacctcgcctacc
tacacccccaccagtcccaagtactcccctacctccccaacatactctccaacctcaccc
aaatactctcccacctcccccacctactcaccaactagccccaaagggtccacctacagc
cccctgtctccgggctacagcaacccctcgcccagcttcaccctcaccagcccggccatc
agcccagatgacagtgacgaggagaacaactga
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integrated database retrieval system
