Oncorhynchus kisutch (coho salmon): 109897106
Help
Entry
109897106 CDS
T09179
Symbol
tmf1
Name
(RefSeq) TATA element modulatory factor isoform X1
KO
K20286
TATA element modulatory factor
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109897106 (tmf1)
Membrane trafficking [BR:
oki04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
109897106 (tmf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
Ribosomal_60s
ATG16
Motif
Other DBs
NCBI-GeneID:
109897106
NCBI-ProteinID:
XP_020347241
Ensembl:
ENSOKIG00005025037
UniProt:
A0A8C7HKJ4
LinkDB
All DBs
Position
LG1:23429292..23439441
Genome browser
AA seq
1172 aa
AA seq
DB search
MSWFSSTQLSSFAKQALTTAQKSIDRVLDIKEDEWGDTVVMPYDDLPGKTPLSGGWGMTQ
WDSPPEECTTTLPPSSEAITTPVTRMVVDETENFFSAFLPSGELQGVMDTQVVSVPPTKS
HRRPQEKDEEDKDDVDPHKTGLTETNRLEDQEATENQAVLTESSSLWSSSEIVLVQTPDS
PVLAQGDSPDDTDSLLISESWIESTVDDTTAVSEDARTERPFTPSETQHDYDDHISEPTV
NTELEPPFNPSPPTPPREILLEAKDPKVEDRQSDTPSPKSEDRQSNTPSPPVSAFSSGTS
TTSDIEVLDHESVQSESSASSRQEIAEAKAGLHLMQGSFQLLSASACGDFPRLEDYPKLT
ESCGSSSDAFERIDSFSMQSLDSRSVSEVNSDDEIPGSRTLASVTAGPTPSPPVRVATTA
QEREKEEEEKQQEEEEDDEEGLTETMKDQSLDENEMEESGRSATPVNSEQPEDLIEQESE
ADVTLSGPTPDHEEQLPPPITEEKRGVSTCQILELQKVIDELSSRLEKRELQLLSVSKDK
ARLEEECDNLKDEVIGLKEESSSVQSLKEEFTQRIADTERKAQLACKERDIAKKEIKGMR
EELSTRLNSNETMEIIREKEEQIRELLEEGEKLSKQQLQHSNIIKKLRVKEKESETKITK
QNKKLKDQEEELKHLQQVLDEKEEVEKQHRDNIKKLNVVVERQEKDMTKLQSDSEELLEN
NRSLQAALDNSYKELAALHKAKASHASEAQEAALSRETQAKEELALALVKAQEEARMQQD
ALVNQVADLRLALQRAEQQQARKEDYLREEISDLQQRLQGAETRNQELSQSVTSATRPLL
RQIENLQASLGGQTASWEKLEKSISDRLVEAQAQLAVAVEKERAATEELMAIKAQLASLE
SQNSLLRQEKGRLHGQLDAEKTRREKLEDDSSREHVELDNLRGEHTRTQEEAKKEKLLLT
NQLEMEKMKVEQEKKKCYLAQEALKEKVDLFVNERKVLVHSVGEPPASSTPSLSRSSSIS
GVDHAGLHSSFSQEDSLGHSLGTMTMSMSGTNLYEAARLSGGSSIIENLQSQLKLREGEI
AQLQLEIASLERTRSSMAEEMVRLTNQNEEMEDSVKEIPTLKVQLQELEQRHNTILQMYG
EKAEEAEELRLDLEDVKNMFKTQIDELLKNQK
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgagttggttcagttctacccaactgtcaagctttgccaaacaagctttgacaacagct
cagaagtccatcgaccgcgtactggacattaaagaagacgaatggggtgacacagtggta
atgccttatgacgatctaccagggaagactccattgagcggtggatgggggatgacacaa
tgggactctcccccggaggaatgcaccacaactctccccccatcatctgaggccatcacg
acccctgtcacccgcatggttgtggatgaaacagagaacttcttcagtgcttttctgccc
tcaggagagctccagggtgtcatggacactcaggtagtctctgtgccgcccaccaagtcc
cacaggcggccacaggagaaggatgaggaggacaaggacgatgtggaccctcacaagaca
ggcctgacagagaccaacagactggaagaccaggaagctactgagaaccaggctgtcctg
actgagtcctcaagtctatggtcttcctctgaaattgttctcgttcagacaccagactct
ccagtcctggctcagggtgattctcctgatgacactgacagcctactaatcagtgagagc
tggatagaatcaactgtggatgatacaactgctgtttctgaggatgcacgaactgaacga
ccatttactccctcagaaacccaacatgattatgatgatcacatctctgaacccaccgtc
aacactgaactagagccccccttcaatccatctcctcccacaccccctagggaaatctta
ttggaggccaaagaccccaaagtggaggacaggcagagtgacacaccctcccctaaatcg
gaggacagacagagcaacaccccctcccctcctgtcagcgccttctcctcaggcacctcc
accactagtgatattgaggttttggaccatgagagtgtacagagcgagagttcagccagt
tccaggcaggagatagcagaggccaaagcaggcctccacctgatgcagggctccttccag
cttctctcagcctctgcctgtggggacttcccccgcttagaggactaccccaagctgacc
gagagctgtggatcctcctcagatgcctttgagcgcatcgactcgttcagcatgcagtcc
ctggacagccgcagtgtcagcgaagtcaattctgatgatgagatcccagggagccggaca
ctggcatctgtcaccgcagggcccacgccttctccgcctgtcagagtggcaaccactgca
caggaacgggaaaaagaagaggaggagaagcagcaggaggaggaagaagatgatgaagag
gggctaacagaaacaatgaaggatcagtctctggatgagaatgagatggaggagagtggt
cgcagtgctacacctgttaacagcgagcagcctgaggacctaatagaacaggaatcagag
gcggacgtcacgctgtcaggtcccacccctgaccatgaggaacagttgcccccaccaata
acggaagagaaaagaggggtgtcaacatgtcagattctggagcttcaaaaggtaattgat
gagctgtcaagccgccttgagaagagggagttacagctgctgtcagtcagcaaagacaaa
gccaggctggaggaggagtgtgacaaccttaaagatgaggtgataggtcttaaggaggag
agttccagtgtgcagtctctgaaggaggagttcacccagcgcatcgcagacacagagagg
aaagcccagctagcgtgcaaggagagggatattgccaagaaggagataaaggggatgagg
gaagagctgtccaccagactgaactccaacgagactatggagatcatcagagagaaggag
gagcagatccgcgaactgctggaggagggtgagaagctgtccaagcagcagctgcagcac
tccaacatcatcaagaagctgcgtgtgaaggagaaggagagcgagaccaaaatcaccaaa
cagaacaagaagctgaaagatcaggaggaagagctcaaacacctacagcaggttctggat
gagaaggaggaagtggagaagcagcacagggacaacattaagaagctgaacgtggtggtg
gagcgccaggagaaggacatgaccaaactccagagtgactcagaggagctcctggaaaac
aacaggagcctgcaggctgccctcgacaactcctacaaggaactggctgcactgcacaaa
gccaaggcaagccatgccagcgaggcccaggaggctgctttgagcagggagacccaggcc
aaggaggagctggctctggccctggtgaaggcccaggaggaggcccgcatgcagcaggat
gctctggtcaaccaggtggctgatctgcggctggctctgcagagggctgaacagcagcag
gccaggaaagaagactacctgagggaggagatcagtgacctgcagcagagactgcagggg
gcggagaccaggaaccaagaactgagtcagagtgttacctctgcaacgcggccgctgctc
agacagatcgagaacctgcaggcctcgctggggggccagacggcatcatgggagaaactg
gagaagagcatctcagatcgactagttgaagcacaggcccagctggctgttgccgtggaa
aaggagcgtgcagcaactgaggagctgatggctattaaggcccagctggcctcactggag
tcccagaattccctgcttcgacaagagaaagggcgtctccacggtcagctggacgcagag
aagaccaggcgggagaaactggaggatgacagcagcagggagcatgtggagctggataat
ctgaggggagagcacactcgaacacaggaggaggccaagaaggagaagctcctcctgacc
aatcagctggagatggagaaaatgaaggtggagcaagagaagaagaaatgctacctagca
caagaggccctgaaggaaaaggtagatctatttgtcaatgagcggaaggtattggttcac
tctgtgggtgagcccccagcctcatccaccccctccctgtcccgttccagctccatcagt
ggggtagaccacgccggcctgcactcctccttctcccaggaggactctctgggtcactca
ttggggacgatgacgatgtctatgagtgggaccaacctgtacgaggcggctcggctcagt
ggaggctccagcatcatagagaacctgcaatcccagctcaaactcagagagggagagata
gcacagctacagctggagattgctagtctggagaggactcgctcgtccatggcggaggag
atggtcagattgaccaatcagaatgaggagatggaggacagtgtgaaggagatccccaca
ctgaaagtacaacttcaggagctggagcagagacacaacaccatcctccagatgtatgga
gagaaggctgaggaggcagaggagctgagactcgacctggaggacgtcaagaacatgttc
aaaacccagattgacgaactgctcaagaaccagaagtag
DBGET
integrated database retrieval system
