Oncorhynchus kisutch (coho salmon): 109897453
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Entry
109897453 CDS
T09179
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109897453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109897453
03036 Chromosome and associated proteins [BR:
oki03036
]
109897453
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109897453
Coactivators
SAGA/TFTC/STAGA complex
109897453
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
109897453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
109897453
NCBI-ProteinID:
XP_020347549
Ensembl:
ENSOKIG00005013008
LinkDB
All DBs
Position
LG1:complement(22334090..22365076)
Genome browser
AA seq
903 aa
AA seq
DB search
MLMSSRTNGDLLKRLQKQGLECKGGVVISNTWSQGSAMDASSSESDSSARHGQGKTVAVS
ASIITPLPNHGGKVASSETQTLNGGSFMNCHNSGSAVSLTGTPLSSSCTSSGNASVAVTV
VNNGPGLSKGHASAVMPPSLNTTIIQTSFVNSQNVVTLSHAASLGTGPAISHIVRPSMQT
AGSGTALNGPNAGLPFDCLNNGQSPTSVAVNAGSHIIMAEAPKTSIQTASCAVTNPSFQS
APRASTPVTVAASPGGSRSIAQQVLAPRHPQTSPNQPNVQNIQLPPGMVLVRSESGQLLM
IHQQTLAQMQSQSQSQGVMAPCPATPTSTPPFQITSVQAPGTPILTRQVTPTTIIKKGLP
VPTSVPVTTTLQKPPVTTTLQRPPVLQSPRIVVGSAAGTSMGTALPGATQRTVTASPGTT
VTLATETMENVKKCKNFLSTLIKLASSGKQSSETAANVKDLVKDLLEGKIEVEDFTNRLY
RELNSSPQPYLVPFLKRSLPALRQLTPDSAAFIQHSGLQQQASATTPTTVVLDSPALRPA
APTIRPHLQPVISKQGLTTPMVLQPRQQGAMVRPLQMTPMVTLRGPPPHSHIMLGQPQVQ
LKQLQTVPVVNPGVLTGSKSSPGAASLATVVQKNKLKEAGGMFRSAMDDDDINDVASMAG
VNLSEESARILATNSELVGAVTRSCKDEAFLHTSTLTSRILEIGKKFGVSDLGPEVVNYV
SHASQTRLQNLLEKVSEVAQQRNINFKEDSRYEQTSDMRAQIKFFEQLDQMEKQRKEEQE
REILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELFQLRQKEANLTALAAIGPRKKRKMEA
AAAAAGAEGSGSSPAASGSGSSGASRQFIRQRITRVNLRDLLFCLENERDTSHSHLLYKG
FLK
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgctaatgtccagcagaacaaacggggatttgctcaagaggttgcaaaagcaggggctg
gagtgcaaagggggtgtcgttattagtaatacgtggtcccagggttcagctatggatgcc
tcatcgagtgagtcggactcatcggcacgacacggccaaggaaaaactgttgctgtcagt
gccagtataataactcctctcccaaaccacggggggaaagtagcctcttccgaaactcaa
actttgaatggaggcagttttatgaactgtcacaattcaggaagcgctgtctctctcact
gggacaccgctgtcaagtagttgcacgagtagcggcaatgcctcggtagctgtcacagtt
gtcaacaacgggccggggttgtcaaaaggacatgcgagcgcagtaatgccaccttcattg
aacaccactatcatccagacatcattcgtgaactctcagaatgttgtcaccttgtctcac
gctgcgagtctgggcactggacctgccatatcacatattgtgaggccatctatgcaaact
gcgggatcgggtacagcgctgaatggtcctaatgcgggattgcctttcgattgcctgaac
aatggtcagtcacccacgtctgtggctgtcaatgcggggtcgcacataatcatggcagag
gcgcccaaaacaagcatacagactgcttcatgtgctgtaacgaacccgtcgttccagagc
gcaccgagggcttccactccggtgacagtggctgctagcccgggagggagccgttctatc
gcgcaacaggtgttggcgcctcggcacccccagacatccccgaaccagcccaacgttcag
aacatccagcttcccccaggtatggtcctggtgcgcagtgagagtgggcagctgttgatg
atccaccagcagaccctggctcagatgcagtcccagtcccaatcccagggagtcatggcc
ccctgcccagccacccccaccagcactcctcctttccagatcacctcagtccaggctcct
ggaacgcccatcctcactaggcaggtgactcccaccactatcatcaagaagggcttacct
gtgccaacctctgttcctgtcaccaccacactccagaagcctcctgtcaccaccacactc
cagaggcctcctgtcctacagagtcccaggattgtggtagggtctgctgcaggcacttct
atggggacagcgctaccaggggccacccagaggaccgtcaccgcatcacccgggaccact
gtcaccttggcaacggagacgatggagaatgtgaagaaatgcaagaacttcctgtctaca
ttaatcaagctggcgtccagcgggaagcagtcctcagagactgccgccaacgttaaagac
ctggtcaaagatctcctggaagggaagattgaagtcgaggacttcaccaacaggttatac
agagagctcaactcctcacctcagccttacctcgtgcctttcctcaagaggagccttcct
gctctgcggcagctcaccccagactcagcagccttcatccagcacagtgggctccagcag
caggcctctgccaccacccccaccactgtggtactggatagcccagccctgcgccctgca
gccccaaccatcagaccacacctccagcctgtcatcagcaaacaggggctgactacccca
atggtgctccagcctcggcagcagggggcaatggtaaggcctcttcagatgacccccatg
gtgaccctcagaggtccgcccccccacagtcacatcatgctgggacagccacaggtgcag
ctcaaacagctacagacagtccctgtagtgaatcctggagtgttgactggatctaagtcg
tctcctggtgctgcctctctggccactgtagttcagaagaacaagctgaaggaagctggg
ggcatgttcaggtcagctatggatgacgatgacatcaatgatgtggcatctatggctggg
gttaacctgtctgaggagagtgcccgtatcctggcaaccaactccgagctggtgggagcg
gtgacacggtcctgtaaggacgaggccttcctccatacctccacactgaccagtagaata
ctggaaataggtaagaagtttggtgtgagtgatctggggccggaggtagtgaactacgtg
tcccacgcctcccagaccaggctgcagaacctgttggagaaagtctctgaggtggcccag
cagaggaacatcaacttcaaggaggacagtcggtacgagcagacgagcgatatgcgtgcc
cagatcaagttctttgagcagctggatcagatggagaaacagaggaaagaggagcaggag
agagagattctgatgaaggcagcaaagtctcgttctcgtcaagaagaccctgagcagctg
cggttgaaacagaaggccaaagagatgcagcagcaggagctgtttcagttgagacagaag
gaagctaacctgacggcgctggcagccatcggccccaggaagaagaggaaaatggaggct
gcagctgctgcagctggagctgagggctcagggtccagtcccgctgcgtctggtagtggt
agttcaggagcatccagacagtttatccgccagcgcatcactcgtgtcaacctcagggac
ctgctcttctgtttggagaatgagagagacaccagtcactcccatctcctctacaaaggc
ttcctcaaatag
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