KEGG   Oncorhynchus kisutch (coho salmon): 109897813
Entry
109897813         CDS       T09179                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X9
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109897813
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109897813
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109897813
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     109897813
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 109897813
NCBI-ProteinID: XP_020347994
Ensembl: ENSOKIG00005039255
LinkDB
Position
LG10:complement(15210810..15220849)
AA seq 522 aa
MFSATRKKFVEGVESDYPDENMYYSQPSMYPHRSDKDMLSSPSPSSSGQLSQLGASLYGP
QSALGFSIRGMGNNTPQLNRSLTQGTPLPSHITPTTGVPTMSLHTPPSPSRGILPMNSRN
MLNHSQVGQGIGMGGGRTNSMGSSGLGSPNRSPPSIICMPKQQPARQPFTINSMSGFGMN
RNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRSRREGSANPTPLLNPLAGRAP
YVGMVTKPSNEPTQDFSIHNEDFPALPGPNYKDPTLSNDDSKTNLNSTGKSTSSADGPKF
PGDKTSSAQNNSQKKGIQVLPDGRVTNIPGGMVTDQFGMIGLLTFIRAAETDPGMVHLAL
GSDLTTLGLNLNSPENLYPKFASPWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLAR
YGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNTYERGT
YYFFDCLNWRKVAKEFHLEYEKLEERPHVPSTFNYNPAQQAF
NT seq 1569 nt   +upstreamnt  +downstreamnt
atgttcagtgctacgagaaagaagtttgtagagggggtggaaagtgactaccctgatgag
aacatgtactacagccagccgtccatgtacccacatcggtcggacaaagacatgctctcg
tctccctcaccgtcgtcatcaggtcaactatcccagcttggggccagtttatatggccca
cagagtgcactaggcttctcgataaggggcatgggcaacaacacgcctcagttaaaccgc
agcttaacgcaaggcactccgctaccgagccatatcacccccaccactggggtacccacc
atgtccctccataccccaccctcgccaagcagggggatcctgccgatgaactcgaggaac
atgctgaaccactcccaggtgggccagggcatcgggatgggcggcggcaggaccaacagc
atgggcagttcagggctgggtagccccaaccgcagcccccccagcattatctgtatgccc
aaacagcagcctgcacggcagcccttcaccatcaacagcatgtcgggattcgggatgaac
cggaaccaggcgtttggaatgaacaactcgttatcaagcaacatcttcaatggcacagac
ggcagtgaaaacgtgacggggctagacctgtctgacttccctgcgttagcagacaggagt
cggagggaaggaagcgcaaacccaacaccgctactcaacccactagctggaagggccccc
tatgttggcatggtgacgaagccatcgaacgagccgacgcaggatttctccatccacaac
gaggacttccctgcactgcctggtcccaactacaaggaccccacgttgagcaacgatgac
agcaaaacaaacctaaactctacaggcaagagcacgtccagtgcagacggtcctaaattc
cccggagacaagacgagctcagctcagaacaacagccagaagaaagggatccaggtgtta
cctgacgggcgggtgacgaacattcccgggggaatggtgacggaccagtttgggatgatt
ggcttgctgacgtttatccgagcagcggagacggacccgggcatggtgcacttggcactg
gggagtgacctcacaacgcttggactcaacctcaactctccagaaaacctgtaccccaag
tttgcctccccctgggcatcagcaccgtgtcgacctcaagacattgacttccacgtcccc
tctgagtacttaaccaacatccacataagggacaagctggcagctattaaactggcgcgg
tacggtgaagacctgctgttctatctgtactacatgaacggaggagacctgctacagctc
ctggcagcagtagagctctttaaccgggattggcggtaccacaaagaggagcgggtgtgg
atcacgcgggcgccgggcatggagcccacactaaagaccaacacctatgagagggggacc
tactacttctttgattgtcttaactggaggaaggtagccaaggagttccacctggagtac
gaaaagctagaagagaggccccacgtcccatctaccttcaactacaacccagctcagcag
gccttctga

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