Oncorhynchus kisutch (coho salmon): 109898565
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Entry
109898565 CDS
T09179
Name
(RefSeq) zinc finger BED domain-containing protein 4
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109898565
04121 Ubiquitin system [BR:
oki04121
]
109898565
Transcription factors [BR:
oki03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
109898565
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
109898565
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
ZBED1_RNase-like_helical
ZBED1_RNase-like
zf-BED
hAT-like_RNase-H
DBD_Tnp_Hermes
Gly_radical
zf-C2H2-SPIN-DOC
DUF8247
DUF5371
DUF659
Motif
Other DBs
NCBI-GeneID:
109898565
NCBI-ProteinID:
XP_020349172
Ensembl:
ENSOKIG00005003321
UniProt:
A0A8C7CPT1
LinkDB
All DBs
Position
LG6:74886087..74889111
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AA seq
648 aa
AA seq
DB search
MTEFKRAFSLVWDHFTLVTPNKVQCALCSQRLSFNKNTSAMLRHLRSRHPSEAWYSNSTS
GAHSSTSNSTSGVHSTFSNSIISSAGVHSSFSGTTGLNSMFANNAAAGHHIQVRTTRQED
LDDALVNMLVKDTQPFSVVEEEGFAAFVQKLDPSYNLPNKQALKKMVGSRCEFINDNVVS
QMVISDFVSLTSDMWTSIDKHSYISVTGHLIAENAQLSTFLLGISKLPENHKMIHIEEAK
NQLVASWGLHSRVAAFVTENSENMVATVQKLGILQLPSFAHVLNLVIKRSMEATLELQDI
RSQARAIVSFFKSNQNAEMRLAEVQGQLGRPEQKLIQEVDSRWNSSFSMLERVFDQRESV
AAALSTLDTDIIPLGSADYEVIHQCLGVLGSFNQATAELASEKRVSASKVIPLVRMLKIT
LEKKHGAIIHPTATQLASNLQRELQTSCSMVETEPILALSALLDPRFKMLAFGNQGYAQE
AVKLLTSECASLIRINPDKDDTLPPSTTGSTTPSPTSPHTSWAMETASVSMATSPSKSHD
GGLWEMFDSKVGETQSVQSSTADAAVEVQHYLSDPYLNRVENPMHYWEKHSKVYPHLFQL
ARKYLSVPASSVPCERIFTKAGDVFNKKRSCLSMKAVEQIMLLNKGLV
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgactgagtttaagagagccttctcactggtgtgggatcacttcactctagtgacaccc
aataaggtccagtgcgccctctgttcacaacggcttagcttcaacaaaaacacctccgcc
atgttaaggcacctaagatcaaggcacccaagcgaggcctggtacagcaactcaacatct
ggagcccactcaagcacaagcaactcaacatctggagtccactcaacgttctctaactca
ataattagtagtgctggagtccactcatcgttctctggtactacaggactaaactcaatg
tttgcaaacaatgctgctgctggacaccacatccaagtcaggaccaccagacaagaagac
ctagatgatgccctagtcaacatgttggttaaagacacccagccattttcagtagtcgag
gaagagggattcgctgctttcgtccaaaagttagacccaagctacaatcttccaaacaag
caagcgctgaagaaaatggtggggtctcggtgtgaattcatcaatgataatgttgtatct
cagatggtaatttctgactttgtcagcctgacttcggacatgtggacttctatcgataag
cacagttacatttcagtgacagggcatttgatagcagaaaatgcccagttatccactttc
ctccttgggatttctaagctgcctgaaaaccacaaaatgatccacattgaggaggccaaa
aaccaactggtggcgagctggggcctccacagcagggttgctgcatttgtcacagagaac
agcgaaaatatggtagccacggttcagaaactaggaatcctccagttgccctcttttgca
cacgtcctgaaccttgtgattaagaggtccatggaggctactttggagctgcaggacatc
cgctcccaagcgcgggctatcgtgtctttcttcaagtcgaatcagaatgcagagatgagg
ttagccgaggtgcaggggcagctaggcaggccggagcagaagctgatccaggaagtggac
tcgagatggaacagtagcttttctatgctggaacgcgtctttgatcagagggagtctgtg
gctgctgctctcagcaccctggacacggacatcatccctctgggatctgctgactacgag
gtcatccaccagtgtcttggagtgctgggttccttcaaccaggccacagccgagctcgcc
tcagagaaacgcgtctcggcctccaaggtcattcctcttgtccggatgctgaagataacc
cttgagaagaagcacggtgccatcatacaccctacggctacacagctggcgtctaaccta
cagagggagcttcagacgagctgcagtatggtggagaccgagccaatcctggctctctct
gctctcctagacccgcgcttcaaaatgttggccttcgggaaccaaggctacgctcaggag
gctgtgaagctcctcacctccgagtgcgcctcgttaatccggataaatccggacaaggat
gacactctgccgccgtccaccaccgggtcaacgacgccctccccgacatcaccccacacc
tcctgggcaatggaaaccgcttccgtctccatggcaacatctccgtctaagtcccacgat
gggggtctgtgggagatgtttgacagtaaagtgggcgagacacagagtgttcagagcagc
acagcggacgcagcggtggaggtacaacactacctcagtgacccgtacctgaaccgagtg
gagaaccccatgcactactgggagaagcactccaaggtgtacccgcacctgttccagctg
gctcggaaatacctcagtgttcccgcctcgtctgtgccatgtgagcgcatattcaccaaa
gctggagatgtgttcaataaaaagaggagttgcctcagtatgaaggctgtagagcagata
atgctgttgaataaaggtctagtatag
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