Oncorhynchus kisutch (coho salmon): 109898616
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Entry
109898616 CDS
T09179
Name
(RefSeq) UV excision repair protein RAD23 homolog A-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03420
Nucleotide excision repair
oki04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109898616
09124 Replication and repair
03420 Nucleotide excision repair
109898616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
oki03051
]
109898616
03400 DNA repair and recombination proteins [BR:
oki03400
]
109898616
Proteasome [BR:
oki03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
109898616
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
109898616
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Rad60-SLD_2
UBA_3
Crinkler
Dsc3_N
OTU1_UBXL
Ubiquitin_2
SWI-SNF_Ssr4_C
Motif
Other DBs
NCBI-GeneID:
109898616
NCBI-ProteinID:
XP_031683505
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Position
LG6:76401869..76409868
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AA seq
355 aa
AA seq
DB search
MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK
DYKIDEKNFVVVMVSKAKSATAASTPSSEAPKAPVQDSGSSSSAGPAPAAIPIPPEEPTP
TVAEPPAPASSDLSVEVQGGDASSALVTGAEYETMLTEIMSMGYERERVVAALRASFNNP
HRAVEYLLTGIPSSPVQETNPPAQLPASARTGTETPTVAEGENPLEFLRSQPQFQSMRQV
IQQNPSLLPALLQQLGRENPQLLQQISQYQELFIQMLNEPAGEVGDVPEVGDLGAAVEEG
APVNYIQVTPQEKEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQGFEDE
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcacgttaaaaacactgcaacagcagaccattcaaattgacatagacccagat
caaacggtgaaggcactgaaggagaagatagaagcagagaggggaaaagataacttccca
gtgtctggacagaagctcatatatgctggcaaaatcctgcaagatgacacacctattaaa
gactacaaaattgacgagaagaattttgttgtagttatggtatctaaggcaaagtctgcc
acagctgcttcaacaccttcctcagaggcacccaaggcccctgtccaggactctgggtcc
tcgtcgtctgcgggcccggcccctgcagccatccctatccccccagaggagcccacacct
acagtcgcagagcccccagctccagccagctcagacctcagtgtggaggttcagggggga
gatgcctcctctgccttggtgacaggagcggagtatgagaccatgctgacagagatcatg
tctatgggttatgagagggagagagtggtagctgctctccgggccagcttcaacaacccc
catcgggccgtggaatacctcctcactggcattcctagcagtccggtccaagagactaat
cccccagcacagcttcctgcatctgcccgcacaggcacagagacccctactgttgctgag
ggagaaaaccctctggagttcctgcgttcccagcctcagttccagagcatgaggcaggtg
atccagcagaacccctcactgctgccagctctgctccaacagctgggccgggagaaccca
cagctcctacagcaaatcagccagtaccaggagctgttcatccagatgctgaatgagccg
gcgggggaggttggagacgtgcctgaggtgggggacctgggtgctgcagtggaggaggga
gctccagtcaactacattcaggtcacacctcaggagaaagaagccatcgagaggttaaaa
gcgttgggtttccccgaggcgctggtgatccaggcctactttgcatgtgaaaagaacgag
aacctagcggccaacttcctcctgaaccagggctttgaggatgaatga
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