Oncorhynchus kisutch (coho salmon): 109898664
Help
Entry
109898664 CDS
T09179
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109898664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oki03041
]
109898664
03009 Ribosome biogenesis [BR:
oki03009
]
109898664
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109898664
Spliceosome [BR:
oki03041
]
Complex A
U1 snRNP components
U1 related factors
109898664
Complex B
109898664
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
Pre-60S particles
Helicases
109898664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109898664
NCBI-ProteinID:
XP_020349309
Ensembl:
ENSOKIG00005016748
LinkDB
All DBs
Position
LG10:62320039..62325583
Genome browser
AA seq
615 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGKFGNPGDRLRKKHWNLDELSKFEKNFY
QEHPDVNRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTNM
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEITR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRGG
HSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYGASG
FDKSGNGFSGYGSNGQSNYGTSQAGAFPTQNFQAPQFSANQGGAQNGMSHQQFPFTQQQA
PQPMVPYPMPPQFPQ
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggtagagatagaggttatggcagtggaccacct
cgttttggaggcggcggaagaggaggtggtgggggggggaagtttggtaatcccggtgat
agactgcgcaagaagcattggaaccttgacgaactctctaaatttgagaagaacttttac
caagaacaccccgatgttaatcggagatctccgcaagaggttgcacagtacagaagtact
aaagctgttactgtgaaggggagggactgccctaatccaattatgaagttccatgaagcc
agttttccaacatacgtgatggatgtcattaacaaagcaggctggtcagaaccaacaccg
atccaagcacagggttggccactggcattgagtggcaaggacatggttggcattgcacag
acaggctctgggaaaactctctcttacttgttgcctgcaatcgtgcacattaaccaccag
cctttcctggaacgtggagatggccctatttgcttagtgcttgcccctacccgtgagctg
gctcagcaggtccagcaggtggcggcagagtatggcagagcttctcgcctgaagtctgtc
tgcgtttatgggggcgcgcccaaagggccacagctccgtgacctggatagaggtgtggag
atttgcattgccacacctggcagacttattgacttcctggaggcgggaaagacgaacatg
cgcagatgcacttacctggtcctggatgaggctgaccgaatgctcgacatgggtttcgaa
ccacaaatccgaaagattgtggaccaaatcagacctgaccgacagacgctgatgtggagt
gccacctggcccaaagaggtgcgccagctggcagaggacttcctgaaggactacgtccag
atcaatgttggagctctgcagctgagtgccaaccacaacatcttgcagattgtggatgtt
tgcaatgatggcgagaaggaagacaagctcctccgcctacttgaggagatcatgagtgag
aaggagaacaagaccataatctttacagagaccaagaggcgatgtgatgagatcactagg
aggatgaggcgggatggttggccagcaatgggcatccatggagacaagagccagcaggag
agggactgggtgctcaatgagttcaagtttggaaaggcgccaattctcattgccacagac
gtcgcctccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgactacccc
aacaactctgaggactatattcaccgcatcggcagaactgcccggagccaaaagactggc
acagcctacaccttcttcacccccaacaacatgaggcaggccagcgacctcgttgctgtg
ctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagaggaggt
cattcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtactcc
tccgggggcaggcgtgacttcagtagctttagggacagggaaaacgatagaggttttgac
agtggaccaaagaaggtctttggcacaaattcacagagtggaggctatggggcaagtggc
tttgacaaaagcggcaatggttttagcggctacggcagcaacggccagtcaaactatggt
accagccaggccggggcgttcccaacgcagaacttccaggccccacagtttagtgccaac
caaggaggtgcacagaatggcatgagccatcaacagttccccttcacgcagcaacaagca
ccacagcccatggtgccttacccaatgccccctcaattcccacagtaa
DBGET
integrated database retrieval system
