Oncorhynchus kisutch (coho salmon): 109899247
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Entry
109899247 CDS
T09179
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit pan3-like isoform X3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109899247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109899247
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109899247
mRNA degradation factors
3'-5' decay
Pan complex
109899247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
109899247
NCBI-ProteinID:
XP_020349893
Ensembl:
ENSOKIG00005007837
LinkDB
All DBs
Position
LG11:complement(74302048..74319671)
Genome browser
AA seq
790 aa
AA seq
DB search
MNSGLPASAAPLGGVGIPCVKVKFCRYYAKDKTCFYGDECQFLHEEPSMASMSLHSGASP
VPLSMSGGAVTYPLSAPPACPVGVPNVPKKGDSLGPAGTVLEGQMLTIPGMEGGTLSDAN
LTNSYFSSSFIGVNGFGSPAESKYSIMQRITNSSSSPSLLDDGAKNFSHSAHDPGNSPMS
SLFSDFGALSISQRRKGPNPTANEFIPKGVPRMATMVQSSGPAFPSPLFPHLGLSSSTAL
APGMSLSAGSTPLHSPKITPQTSPAPRRRSHTPNPNNPNPANYMVSTSVSDQGAHIIQKE
TVGGTTYFYTDNTPAPMAGMVFPTYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINR
HLITMAQLDQSENTGVPSEVDSYHSLFPLEPVPPPNRLQKTSNFSYITSCYKAVNSKDDL
PYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNAVTLREVFTTKAFGDHSLVFSYDFHAGAE
TMFSRHFNDPAADSYFTKRKWGQHEPTPPRQHAGLLPESLIWAYIVQLSSALRTIHTAGL
ACRVMDPSKILITGKTRLRVNCVGVFDVLTFDNSQTNHVTLMPQYQQADLISLGKVVLAL
ACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQSRLRSVNDIMPMIGARFYTQL
DASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDHTWSETGDRYLLKLFRDH
LFHQVTEAGTPWIDLSHIVSCLNKLDAGVPEKISLVSRDEKSVLVVTYSDLKRCFDNTFQ
ELQQAAVGPL
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagcttcagctgctccactcgggggtgtcggaataccctgcgtc
aaggtgaagttctgccgatactacgcaaaggataagacttgcttttatggggacgagtgt
cagtttttgcatgaggagccgtctatggcaagcatgtcccttcacagtggagcaagtcct
gtccctttatccatgtctggaggagccgtgacgtatccgcttagtgcacccccggcctgc
ccggttggggtaccgaacgtccccaaaaagggcgactctctggggcctgcaggcaccgtt
ctggagggacagatgttaaccatccctgggatggagggtgggaccctgagcgacgccaat
ctgaccaactcctacttcagcagcagcttcattggggtcaacggcttcgggagcccggca
gagtctaaatactctatcatgcagagaatcaccaacagcagcagttctcccagtctcctt
gacgacggtgccaagaacttcagccacagcgctcacgatccagggaattcccccatgtct
tcactcttcagtgactttggtgctctgagcatatcacaaaggagaaagggtcctaaccct
acagccaatgagttcatccctaagggggttccccgcatggccactatggtccagtccagt
ggtccggccttcccatcacccctcttcccccacctcggcctcagcagctccaccgccctc
gcacctgggatgtctctctctgcggggtccacccctctccactcccctaaaatcaccccc
caaacctcacctgcccctcgccggcgtagccacacccccaaccccaataaccccaaccca
gccaactacatggtgtccaccagtgtgtctgaccagggggcccacatcatccagaaggag
acggtgggggggaccacctatttctacacggataacacccccgctcccatggccgggatg
gtgtttcctacctaccacatctacccccccactgctccccacgtggcctacatgcagccc
aaagccaacgccccatccttcttcatggctgatgagctccgacaggagctgattaacaga
catctgattaccatggctcagcttgaccagtcagagaacacaggtgttccatctgaggtg
gatagctaccacagcctgtttcccctggagcctgtccctcctcccaaccgcctgcagaag
accagcaacttcagctatatcacttcctgctacaaggctgtcaacagcaaggacgaccta
ccgtactgcctgaggaggatacatggtttcaggctggtgaacaccaagtgtatgatgctg
gtggacatgtggaagaagatccagcactccaacgctgttaccctgagggaggtcttcacc
accaaggcctttggagatcactcgttggtgttctcctatgacttccatgcgggggcagag
accatgttcagccggcatttcaacgaccccgcggccgactcctacttcaccaagaggaag
tggggacagcacgagcccactccaccgcggcagcacgcaggtctgctccccgagtctctg
atctgggcctacatcgtccagctgagctcagccctcagaactatccacactgctggtctg
gcctgtagggtcatggaccccagcaagatcctcatcaccggcaagaccaggttacgagtg
aactgtgtaggggtgtttgatgtcttaacgtttgacaacagtcagaccaaccatgtgacc
ctcatgccacagtaccagcaagcggacctgatatccctgggcaaggtggtgttggccctg
gcctgtaactctctggctggcattcagagagagaacctgcagaaggccatggagttggtg
tctatcaactactcatcagacctcaagaacctcatcctgtatctgttgacagagcagtct
aggctgcgcagcgttaatgacatcatgcccatgattggagctcgcttctacacacagctg
gatgcatcacagatgagaaatgatgtcatcgaggaggacctggcgaaggaggtccagaat
ggtcgtctcttccgtctgttggccaaactgggcaccatcaacgagagaccagagtttcag
aaggaccatacgtggtctgagacgggggaccggtacctgctgaagctgttcagagaccac
ctgttccaccaggtgaccgaggctggaaccccctggatagacctcagccacattgtttcc
tgcctcaacaaactggacgcgggcgtgcctgagaagatcagcttagtgtctcgggatgag
aagagtgttctggtggtgacctactcggacctgaagcgctgcttcgacaatacctttcag
gagctgcagcaggccgctgtcggaccgctgtag
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