KEGG   Oncorhynchus kisutch (coho salmon): 109899312
Entry
109899312         CDS       T09179                                 
Symbol
wdr48
Name
(RefSeq) WD repeat-containing protein 48 isoform X3
  KO
K15361  WD repeat-containing protein 48
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    109899312 (wdr48)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oki03400]
    109899312 (wdr48)
DNA repair and recombination proteins [BR:oki03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     109899312 (wdr48)
SSDB
Motif
Pfam: WD40_Prp19 DUF3337 WD40 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_SPT8 NBCH_WD40 Beta-prop_SCAP Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_DCAF12 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IP5PC_F Beta-prop_Vps41 WD_LRWD1 WDR54 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_NUP159_NUP214 RAWUL WD40_like Nucleoporin_N Tfb2_C
Other DBs
NCBI-GeneID: 109899312
NCBI-ProteinID: XP_020350015
Ensembl: ENSOKIG00005050242
LinkDB
Position
LG11:70867288..70877480
AA seq 676 aa
MATLHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVN
QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMG
TVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLG
QQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDRKIYCTDLRNPDLRVLICEEKAPVLKM
ELDRSADPPTALWVSTTKSTVNKWSLKGIHNFRASGDYDNDCTAPLTPLCTQPEQVVTGG
ASIIQCHILNDKRHILTKDTNNNIAYWDVLKACKGEDLGKIEFDEEIKKRFKMVYVPNWF
SVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYWPRTHIN
PMDEETEMNHMNGEHESRIQKGNGYFHVPPHTPVIFGEAGGRTLFRLLCRDSGGETESML
LNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEHVY
EKIINLDNESQTGASANNDKPSEQKEEEDVAVLAEEKIELLCQDQVLDPNMDLRTVKHFI
WKSGGDLTLHYRQKST
NT seq 2031 nt   +upstreamnt  +downstreamnt
atggcgactcttcacaggcaaaatgctgctgggcggagaaaagtccaggtgtcctatgtg
attcgggatgaggtggagaagtataaccgcaatggggtgaatgctctgcagctcgacccg
gccttgaaccgcctcttcacggctggccgagactccattattaggatatggagcgtcaac
cagcacaagcaggacccgtacattgcatcgatggaacaccacacagattgggtcaatgac
atcgtcctctgttgcaatgggaagacattgatatctgcttcctcagacaccacagtgaaa
gtctggaatgcgcataagggattctgcatgtccacattgcgaacacataaggactatgtc
aaagccttagcctatgccaaggacaaggaactggtggcctcagcagggctggacagacag
atctttctatgggacgtcaacacactaacggcactgaccgcctccaataatactgtcacc
acctcctcactgagtggcaacaaagactccatctacagtctggctatgaatcagatgggc
accgtcattgtgtcagggtccactgaaaaggtgctgagagtttgggatcctcgaacctgt
gccaagctgatgaagttgaaaggtcacacagacaacgttaaatcattactcctaaacagg
gatggcactcagtgtctctcgggcagctcagacgggaccatccgtctgtggtcgctgggg
cagcagcggtgcatcgctacctaccgggtgcacgatgagggcgtgtgggccctgcaggtc
aacgaagccttcacgcatgtctactccggcggtcgtgaccgcaagatctactgcaccgac
ttgaggaatccagacctccgcgttctcatctgcgaggagaaagcccccgtcctcaagatg
gagctggaccgctcggcagacccccccacggccctctgggtctccaccaccaagtccacc
gtcaacaaatggtctctgaagggcattcataatttccgagcatctggcgattacgacaac
gactgcactgctcccctgacgcctctctgtactcaacccgagcaggttgttacaggggga
gccagcattatccagtgccacattctgaacgacaagagacacatactaaccaaagacacc
aacaacaacattgcatactgggatgttttaaaggcgtgtaaaggggaagacctgggaaag
attgagtttgacgaagagattaaaaagaggttcaaaatggtctatgtgccaaactggttc
tcagtggatcttaaaactgggatgttgaccatcacgctggatgagagcgactgctttgct
gcatgggtgtcagccaaggatgcaggcttctccagtcctgatgggtctgaccccaagttg
aacctgggtggactgctgctgcaggccttactggagtattggccccgaacccacatcaac
cccatggatgaagagacggagatgaaccacatgaacggggagcatgagagcaggatacag
aaaggtaacggctacttccatgttccccctcacacgccagtcatctttggagaggcaggg
ggaaggaccttgttcaggttgttgtgtcgagattccggtggtgagactgagtccatgttg
ctcaatgagaccgtgccacagtgggtcatcgacatcactgtagataaaaacatgcccaaa
ttcaacaaaatccccttctacctccagcctcattcttcttctggtgcaaaaaccttaaag
aaggaccgcctgtcggccagtgacatgctccaggtgaggaaggtgatggagcacgtgtac
gagaagatcatcaacctggacaacgagtctcagacgggggcctcggcgaacaacgacaag
cccagtgagcagaaggaggaggaggacgtggccgtgctggccgaggagaagatcgagctg
ctctgtcaggaccaggtattggatcccaacatggacctgcggaccgtcaagcattttatc
tggaagagtggtggagacctaacccttcactaccggcagaagtccacgtga

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