Oncorhynchus kisutch (coho salmon): 109899471
Help
Entry
109899471 CDS
T09179
Name
(RefSeq) transcription factor Sox-17-alpha-A
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
109899471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109899471
Transcription factors [BR:
oki03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109899471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
109899471
NCBI-ProteinID:
XP_020350332
Ensembl:
ENSOKIG00005046220
UniProt:
A0A8C7KRD7
LinkDB
All DBs
Position
LG11:61167400..61169787
Genome browser
AA seq
393 aa
AA seq
DB search
MSSPDAGYASDDQNQARCAISIMMPGMGHCHWADPLSPLGDTKEKSESSSGNQNRGKNEP
RIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVSEKRPFVEEAERLRV
QHMQDHPNYKYRPRRRKQAKRIKRLDSGFLVHSMSNQQSTSLGGEGRVCMESMGYHHEHG
YQVSPQSLGHYREAQALGGASYESYCLPTPDTSPLDAVETDSMFFHSHSQEECHMMPVYA
YHSQGAEYPPQDPHSNHHANPMLHRHHSSPTEQQQASQAGPMPPTFNQLAMYYSQHCSPS
HPKRHPGHGAGQLSPPPDSQPHPADQVEQMHPSELIGEVDRSEFEQYLSSSRPGDMTGLS
YGVHEANMQGPESLISSVLSDASTVYYCNYNNS
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtcccgatgcgggttacgccagtgacgatcagaaccaggctaggtgcgcgatc
tcaatcatgatgcctggaatgggacactgtcactgggcagaccccctgagccctctcggg
gacaccaaagagaagagcgagtccagctccgggaaccagaaccgtgggaagaatgagccg
aggatccggagacccatgaatgcgttcatggtgtgggcgaaggatgagcgcaagcggctg
gcacaacaaaatccagacctgcacaatgcggagttgagcaaaatgttggggaagtcgtgg
aaagcccttcctgtgtcggagaagcggccgtttgtagaggaggctgagaggcttcgggtg
cagcacatgcaggatcaccccaactacaagtaccgaccccggaggaggaagcaggcgaag
aggattaagcgcctggactccgggttcctggtccacagcatgtccaaccagcagagcacc
tccctgggtggggaaggtagggtgtgtatggagagcatgggttaccaccatgagcatggc
taccaagtgtctcctcaatccctcggccactaccgcgaagcccaggccctcggaggggct
tcctacgaatcctactgcctgcccacccccgacacatccccgctggatgccgtggagacc
gactccatgttcttccacagccactctcaggaggagtgccacatgatgcccgtgtatgcc
taccactctcagggggcagagtacccacctcaggaccctcactccaaccaccacgccaac
cccatgctccacagacaccactcctcccccacagagcagcagcaagcctcccaggctggc
cccatgccccccaccttcaaccaactggccatgtactacagccagcactgcagccccagt
caccccaagcgacacccaggccatggggcaggacagctctcccctcccccagactcccaa
ccccacccagcagaccaggtggagcagatgcacccctcagagctgataggggaggtggac
cgcagtgagtttgagcagtacctgagctcctccagacctggagacatgacaggcctgtct
tatggggtgcatgaggccaacatgcagggacctgagagcctgatatcctctgtgctctct
gacgccagcacagtgtactactgtaactacaacaactcctaa
DBGET
integrated database retrieval system
