Oncorhynchus kisutch (coho salmon): 109900616
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Entry
109900616 CDS
T09179
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03008
Ribosome biogenesis in eukaryotes
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109900616
09123 Folding, sorting and degradation
03018 RNA degradation
109900616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109900616
03019 Messenger RNA biogenesis [BR:
oki03019
]
109900616
03009 Ribosome biogenesis [BR:
oki03009
]
109900616
03016 Transfer RNA biogenesis [BR:
oki03016
]
109900616
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109900616
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
109900616
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
Pre-60S particles
RNases
109900616
Transfer RNA biogenesis [BR:
oki03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
109900616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
109900616
NCBI-ProteinID:
XP_020351903
Ensembl:
ENSOKIG00005003563
UniProt:
A0A8C7CUG7
LinkDB
All DBs
Position
LG12:complement(17205829..17250678)
Genome browser
AA seq
963 aa
AA seq
DB search
MGVPAFFRWLSRKYSTIVVHCTEERSKECNGVRIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKAAPKNEDEMMVAIFEYMDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKSRIREEILGKGGYLPPVEIKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLSNDPGWRNITVILSDASVPGEGEHKIMDYIRRQRAQPHHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNQPRPCAMCGQKGHEIKDCQGVAREKQGEHDEFADTMPASEQE
FIFIRLCVLREYLERELTMASLPFPFDFERTVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYITENGFVKLESVELIMQAIGVAEDNIFKKRKEDDEGFKRRNKD
KKKRMKAQQQGPAYMTAGQFAPQALGGRGRPGVVQNARHQAFDMRMQGRDQHNKDAAQSL
KAMMKNGGQAGSSDGQDGRGVKRKAEDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDATD
DDFRKKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFTDFELGTKP
FKPLEQLMGVFPAASGNFLPQTWRSLMSNPESSIIDFYPDDFAIDLNGKKYAWQGVALLP
FVDERRLRAALAEVYPNLSPEENKRNSLGSDMLFVGKSHPCCDFIQELYRGESHEGTEMP
AELCHGIQGALNLDEDPILPDKPVQSPIPMLRDIAQNTAIGVKYKDPQYGETFVFKAVIL
PGAKMPEKVLKPGDWERGNRGRGNWRPQLGFNSNRQQVHLDQSAFRALGHSMNRQQQGGG
QYSNAPPPGNYHQGNYNRPPHSGSGGHLPPFQHSRQQGLLGTPPPYNPPQQYPRQQYGGG
GHGWDRSTQRGGHGGGQGQGGYHQQRGQDDHRGDRRGDRGGQPGYHSGRNYHLPPPEGKY
NWS
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcattttttcgttggttgagtcggaaatattctacaattgttgtccat
tgtactgaggagaggtccaaggaatgtaatggggtacgaattcctgttgataccagcaaa
ccgaatccaaatgaagtggagtttgacaatttgtacttggacatgaatgggatcattcac
ccctgtacacatcctgaagacaaggctgcacccaaaaatgaagatgaaatgatggttgcc
atctttgaatacatggatcggctcttcaatattgtgcgacccagaagggttctctacatg
gctattgatggagtggcccctcgcgccaaaatgaaccagcagcgctccaggcgattccgt
gcttctaaggaaggagtggaactggttgaggagaaatcccgcatccgagaggagatcctc
gggaaaggagggtatcttccaccggttgaaatcaaggagagatttgacagcaactgtatc
accccaggcacagagttcatggacaaccttgcaaagtgtctccgttactacgttgcagac
agactcagtaatgaccctggatggcgtaacattacagtaatcttgtctgatgccagtgtc
cctggtgagggggagcataagatcatggactatattagacggcagagagctcaaccccac
catgaccccaacacacaccactgtctttgtggagctgacgctgacctgatcatgctgggt
cttgccactcacgagcccaatttcaccatcatcagagaagagttcaagcccaaccagcct
aggccctgtgctatgtgtggacagaaaggccatgagatcaaggactgccagggagtggcc
agggagaaacagggagagcatgatgagtttgcagacactatgccggcttctgaacaggag
ttcatattcatcaggctgtgcgttttgcgcgagtacctggagagagagctgacaatggcc
agtctgccctttccctttgactttgagaggactgtcgacgactgggtcttcatgtgcttc
tttgttggcaatgatttcctgcctcacttaccgtccttagagattagagagggtgcgatt
gatcgactggtgggcatctacaaagacgtcgtgcacaagactggaggctacatcacagag
aatggttttgtcaaattggagagtgttgagttgatcatgcaggccatcggcgtggctgag
gacaacatcttcaagaagcgcaaagaggacgatgagggattcaagcgaaggaataaggac
aaaaagaagagaatgaaggctcagcagcagggcccagcctacatgaccgctggtcagttc
gccccccaggcccttggcggcagaggcagacctggggttgtccagaacgcccgacaccaa
gccttcgacatgaggatgcagggcagggaccagcacaacaaggatgctgcgcaatcccta
aaagccatgatgaagaatggtggccaggcaggaagcagtgatgggcaggatggccggggt
gtgaagcggaaagccgaggacagtgacagcgagccagagcctgaggataacgtcaggttg
tgggaggacggctggaagcaaagatactacaaaaccaagtttgatgttgacgcgactgac
gatgacttccgcaaaaaggtggtgaagtcctacgtggagggtctctgctgggtactccga
tactactaccaggggtgcgcgtcctggaagtggtacttcccgttccactacgccccattt
gcctcggacttcaaagacatcaaaggcatgttcaccgactttgagcttgggaccaagccg
ttcaagcccctggaacagctgatgggtgtcttccctgccgccagtggaaacttcctgccc
caaacatggcggtcactcatgagcaacccagaatcctccatcattgacttctaccctgat
gactttgccattgacttgaatggaaagaaatacgcttggcagggtgttgcattgcttccc
ttcgtggatgagcgcaggctgagggcagccctggctgaagtctacccaaacctttctcca
gaggaaaacaagaggaacagccttggcagtgatatgctgtttgttgggaagtctcatcct
tgctgtgacttcatccaggaactgtaccgtggagaatctcatgagggcactgagatgcca
gcagaactatgccatggaattcaaggtgcattaaatcttgacgaagaccctatcctacca
gataagccagtgcagtctcccatccccatgctgcgggacattgcacagaacaccgccatt
ggagtgaaatataaggacccacagtacggagagacctttgtgttcaaggctgtcattctt
cctggagctaagatgcctgagaaggttctgaagcctggggactgggagagaggtaaccgt
ggcaggggtaactggaggccccaactgggtttcaactccaacaggcagcaggtccacctt
gaccagtcagccttcagggccctgggtcacagcatgaacagacagcagcagggaggtggg
cagtacagcaacgctccgccccctggcaactaccaccaggggaactacaacaggcccccc
cacagcggcagtggtggtcacctcccacccttccaacattctaggcagcagggtcttcta
gggacacctcccccatacaaccctccacagcaatatccaaggcagcagtatggtggtggt
gggcatggctgggaccggtcgactcagagaggaggccacggaggggggcagggccagggc
ggctaccatcagcagcgtggtcaggacgaccacagaggagaccgcagaggagaccgtgga
ggacaaccgggataccactctggacggaattaccacttgccacccccagaaggaaaatac
aattggagttaa
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