Oncorhynchus kisutch (coho salmon): 109900730
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Entry
109900730 CDS
T09179
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04517
IgSF CAM signaling
oki04520
Adherens junction
oki04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
109900730
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
109900730
04530 Tight junction
109900730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
PDZ_2
Yop-YscD_cpl
RA_3
RASSF8-10_RA
Motif
Other DBs
NCBI-GeneID:
109900730
NCBI-ProteinID:
XP_020352093
Ensembl:
ENSOKIG00005011323
LinkDB
All DBs
Position
LG12:complement(23523845..23648169)
Genome browser
AA seq
1963 aa
AA seq
DB search
MSGSREEERRKLADIINHWNANRLDLFEISQPTEDLEFHGVMRFYFQDRVAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERKLDLDEKPLVVQLNWNKD
DREGRFVLKNENDIIPKKAQSNGPEREKEGVIQNFKRTLSKKEKKKEKKREKEAHISDGD
EQALSREDGENSRLAAEVYKDMPENSFTRTISNPEVVMKRRRQQKLEKRMQEFRSSDGRP
DSGGTLRIYADSLKPNIPYKTILLSTTDMADFAVVEALEKYGLEKENPREYCIARHTDDK
SGKEIILDDTECPLQIFRDWPNDRGDLVFQLKKRPPDYVPKKGRKPEDKGPRGKGMDVPL
HGSLPPEKLPYLVELSPGRGNHYGYYTYRHHEDGSDSRDKPKLYRLQHSVTEVGSDTTDD
CSIQLFGPGILPHHCKLMHTEGLVTVTPHSLEAETYVDGQRVTETTVLRSGATLQFGASH
VFKFVDPSYDHSMGKGGPGPMMRGRHKSGSVPETTFDLQGDLHSGTALSTSKSSGKLEME
RSSNGSERGMVKPMIRGEQQDSRSQDSLSPEVTLPASIEFRDNSEDTFLTAIINYTNSST
VHFKLSPTYVLYMTCRYVMSSHYRPDIGPSERTHKVIAIVNKMVSMMEGVIQEIPEEDQK
QKNIAGALAFWMANASELLNFIKQDKDLSRITLDAQDVLAHLVQMAFKYLVQCLQSDLSN
YMPAFLDDPEEQNPQRPKIEDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFN
KLVMEADSGLCSHYWGAILRQQLSHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSM
QDVQNIHNTCFKLNSLQLNALMTNYHCAPDEPYIPPELIDHVVAVAENTADELARSDGRE
VQLEEDPDLQLPFLLPEDGYSCDVVRNIPNGFQEFLDPLCQRGFCRLTPHPRSPGTWTIH
FEGVDCDSHFSADNSDLQMRKEPEVVTVTLKKHNGMGLSIVAAKGAGQDKLGIYIKSVVK
GGAADMDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATL
LNQPSPMMPRASQGGRDKNGKLRPKSEGFELYNNSVQNGSPESPQADWQAYPEPKKMSGE
ERLLKNRADHRSSPNVANQSQSPGGKAVYTRGPGTKITSVSTGNLCVDDEPSPPHPEAYP
IPTQTYPREYFTIPASKSTNRMDSAPGQIYADDRGPPGPMEDHHHNSIAMQRVDHSQEEL
CDLPGGYPPTGLRPEDLVHLQQQQREADYQRGSGEHWVNHHQVSSSVESSTSSQEHLNYS
SSSSNKTQSNHKSGPGRWKTPGPIAPHPGPVAQSTRTDLPPPPPPPPPVHYQDFELQPDL
PLPPPPSATQQQAAAADRKKREEQQRWYEKEKARLEEERERKRREQERKLGQVRNPAVPV
THNNNQHGGTLPPPTQHQQMPPPRSPMQQVPHPYLPPQGQQQAQQQQPPRPEKLSTLPRA
GTLPPQGNPMDTVIRELLPQQQPRTIERRDLQYITISKEELSSSDSLSPDPWKRDAREKL
EKQQQLHIVDLLDREIQDLQAKPERTAEESDRLRKLMLEWQFQKRLQESKQSDEEDEEDD
DEDVDTMMIMQRLEAEKRARVSCPGEQRSSVHSGEQEDVEKLQDEERRRKQQLEEIRKRE
AEDRAKQEEERRWREEERARREVDEKRRQEEEYYTRLEEGRRRQHEEAERKLLTPDEPGL
YRPPLPRDYQPQPPPPTASPATTATNAPPPPPQRNTSYLKTQVVSPDALYTAKFVSYNDE
EDEDTTGLAGQVKLSSTRKSYGDLPPAHKPQPPARKPRPMSDGIFLSSSFQPPAVNANST
AGQPPPPPIKPSLSFIPTGNFKGFNSYTGNTTGVVGSGEVYKDPREKWTKGGQEQENTLT
EGAPESMTFKERQRLFSQGKEVSNKVKASRKLMELENELNTKQ
NT seq
5892 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggagcagggaggaggagcggcggaaactagccgatatcattaaccactggaac
gccaaccggcttgacctgttcgagatcagccaacccaccgaggacttggagttccacggc
gtgatgcgtttctacttccaggaccgcgtagcagggaactttgccaccaagtgtatccgc
gtgtcctccacggccaccactcaggatgtcatcgagacgctggccgagaagttccggccc
gacatgaggatgctctcctcgcccaaatactccctctacgaggtccatgtcagcggggaa
gaacggaagctggacctggatgagaagccactggttgtgcagctcaactggaacaaagac
gaccgcgagggacgtttcgtcctcaagaatgagaacgacatcatccccaagaaggcgcag
agcaatgggccggagagggagaaggagggagtcatccagaacttcaaacggacactgtcc
aagaaagagaagaagaaggagaagaagagagagaaggaggctcacatttctgacggagat
gagcaagcactgagcagagaagatggtgagaactccagactggcggcggaggtgtacaag
gacatgccggagaacagcttcacccggaccatctccaaccctgaggtggtgatgaagagg
aggcggcagcagaaactggagaagaggatgcaggagttccgcagcagcgacggcaggcca
gactcgggggggacgttgaggatctatgcagacagtctgaaacccaatatcccctataag
accatcttgctgtccacgacagacatggcagactttgctgtggtggaggccctggagaag
tacggcctggagaaggagaacccccgggagtactgcatcgccaggcacacagatgacaag
tctgggaaggagatcatcctggatgatacagagtgtcctcttcagatcttcagagactgg
cccaacgacagaggagacctagtattccagctgaagaagagacctccagactacgtgcca
aagaagggccgcaagccagaggacaagggccccagggggaagggcatggacgtgcccctg
catgggtctctacccccagagaaactgccttacctggtggagctcagcccagggaggggg
aatcactatggctactacacctatcggcaccacgaagacggctcagactccagggacaaa
ccgaaactctaccgcctacagcacagtgttactgaggtgggctcagacactacagacgac
tgctccatccagctgtttggtccaggtatcctgccccaccactgtaaactgatgcatacg
gagggtttggtgacagtgacaccacacagtctggaggctgagacttacgtggacggccag
cgtgtcaccgagaccaccgtgctgcgaagcggagccacactgcagttcggcgcctcccac
gtgttcaagtttgtggaccccagctacgaccacagcatgggcaagggagggcccggaccg
atgatgagaggcaggcacaagtcaggaagtgttcctgagacgacctttgacctgcaaggg
gacctccacagtgggacggccctctccaccagcaagagctcagggaagctggaaatggag
cgttcatccaacggcagcgagagaggcatggtcaaacccatgatccgcggggagcagcag
gacagcaggtcccaggacagcctgagcccagaagtgacgctgccagccagcatcgagttc
agggacaactccgaagataccttcctgacggccatcatcaactacaccaacagctccacg
gtgcacttcaagctgtcccccacctacgtgttgtacatgacctgtcgctacgtcatgtcc
agccactaccggcccgacatcggcccctcggagcgcacccacaaagtcatagccatcgtc
aacaagatggtgagcatgatggaaggagtcatccaggagattcctgaagaggaccagaag
cagaagaacattgcgggggccctggctttctggatggccaatgcctcagagctgctcaac
ttcatcaagcaggacaaggatctgtcgcgcatcacactggacgcccaggacgtgctggca
cacctcgtccagatggccttcaagtacctggtccagtgtctgcagtctgacctgagtaac
tacatgcctgccttcctggacgacccagaggaacagaaccctcaaaggcccaaaatagag
gatgttttgcacaccctgacgggcgccatgtcgctgctgcgtcgttgccgtgtcaacgcg
gcgctgaccatccagctgttctcccagctcttccacttcatcaacatgtggctgttcaac
aagctggtgatggaggctgactctggactgtgttcacactactggggcgccatcctccgc
cagcagctcagccacatcgaggcctgggcagagaaacagggcctggagctggctgctgac
tgtcacctcagtcgcatcgtacaggctacgactctcctcaccatggacaagtactccatg
caagacgtgcagaacatccacaacacctgcttcaagctgaactccctgcagctcaacgcc
ctcatgaccaactaccactgtgctcccgacgagccttacatccccccagagcttatagac
catgtggttgccgtggcggagaacacagcagatgagctggctcgtagcgacggccgagag
gtccagctagaggaggaccctgacctgcagctgcccttcctgctgcccgaggacggctac
tcctgcgacgttgtgaggaacattcccaacggattccaggagttcctggaccccctttgt
cagagaggattctgtcggctaacccctcacccacgctcccctgggacctggaccatccac
tttgaaggagtcgactgcgacagccacttctctgcagacaactcagacctgcaaatgcgg
aaggaaccggaagttgtgacggtcaccctgaagaagcacaatggcatgggcctcagcatt
gtggctgccaagggtgctgggcaggacaagctcgggatctacatcaagtctgttgtgaag
ggaggcgcggctgacatggacgggcgtctggctgcaggggaccagctgctgagtgtggac
ggccgcagcctggtgggcctctcccaggagagggctgcagagttgatgacgaggacaggc
tctgtggtgacactggaggtggccaaacagggagccatctaccacggccttgccacactc
ctcaaccagccttctcctatgatgcccagagcatcacaaggagggcgtgacaagaatggt
aaactgagaccaaagagcgaaggatttgaactgtacaacaactcggtccagaacggctct
ccagagagcccccaggccgactggcaggcctacccagaaccaaagaagatgagcggggag
gagaggctactgaagaaccgggccgaccaccgctccagccccaacgtggccaaccagagc
cagagtccgggagggaaggccgtctacacacgaggacctgggaccaagatcacctctgtc
tccacgggcaacctgtgtgttgacgacgagccctctcctccccatccggaggcctatcct
attcccactcagacctaccccagggaatacttcaccatcccagcctccaagtctacgaac
cggatggactcggccccaggacagatatacgctgacgacaggggtcctcccggccccatg
gaagaccaccaccacaacagcatagctatgcagcgggtggaccactctcaggaggagctg
tgtgacctcccagggggctaccctccaaccggcctgcgtcctgaggacctggtccacctg
cagcagcagcagagagaggctgactaccagcggggcagtggggaacactgggtcaaccac
caccaggtctcctcctctgtggagtcctccacctccagccaggagcacctcaactactcc
tcgtcctcctccaacaagacccagagcaaccacaagagtggcccgggacgctggaagacc
cccggccccatcgctccccacccaggccccgtggcccagtccacacgcacggacctccct
ccacctccaccgccccctccccccgtacactaccaggactttgagctccagcccgacctg
cccctgccccctcctccctcggccacccagcagcaggccgccgccgccgaccgcaagaag
cgcgaggagcagcagcgctggtatgagaaggagaaggcccggttagaggaggagagggag
aggaagaggagggagcaggagaggaagctgggacaggtccgtaacccagctgtgcctgta
acccacaacaacaaccaacacgggggcacactcccccctcccacacagcaccagcagatg
ccccctccccggtcccccatgcagcaggtaccccatccctacctcccaccccagggccaa
cagcaggcccagcagcagcagccccccaggccagagaaactgtccaccctgcccagagca
ggcaccctgccccctcagggtaacccaatggacacagtgatcagagagctgctcccccag
cagcagccccgcaccatcgagcgccgggacctacagtacatcaccatcagcaaggaggag
ctgtcttccagcgacagcctgtccccagacccctggaagagggacgcccgggagaagctg
gagaagcagcagcagctgcatatcgtagacctgctggacagggagatccaggacctgcag
gccaagccggagcgtacggccgaggagagcgaccggctcaggaagctgatgctggagtgg
cagttccaaaagagactgcaggagtccaagcagagtgatgaggaagatgaggaggatgac
gacgaggacgtggacaccatgatgatcatgcagcggctggaggcagagaagagagcaagg
gtgagctgccctggagagcagaggtctagtgtgcacagtggagaacaggaggatgtggag
aagttgcaggacgaggagcggcggaggaagcaacagctggaggagatccgtaagcgcgaa
gcggaggaccgggccaaacaggaggaggagagacgctggagagaggaggagagggccaga
cgagaggtcgatgagaagaggaggcaggaggaggagtactacacacgtctggaggaaggg
cggcgccggcagcacgaggaggccgagcgcaagctgctgacgcctgacgagcctggtctg
tacagacctcccctccccagggactaccagcctcagcccccccctcccactgcatccccc
gcaaccactgccactaacgctccaccacccccgcctcagagaaacacttcctacctcaaa
acacaggtcgtctcccctgacgccttgtacactgccaagtttgtctcgtacaatgacgag
gaggatgaggacactacaggcctagcaggtcaggttaagctctcctccaccaggaagtcc
tatggcgacctcccgcccgcacacaagccgcagccgcctgcgcgcaagccccgtcctatg
tctgatgggatctttctgtccagctcattccagccgccggctgtcaatgccaacagtact
gcagggcagccccctccccctcccatcaaacccagcctcagcttcatcccgacaggaaac
tttaaaggatttaattcatacactggaaacacaaccggggttgtaggatcaggagaagtt
tacaaggacccgcgagagaagtggacgaaaggtggtcaagaacaggaaaacactttaact
gaaggagccccggagagtatgacattcaaggagcgccagcggcttttttcccaagggaag
gaagtatccaacaaagtcaaggcctcgcgaaaactcatggagctggaaaatgaactcaat
acaaagcagtag
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integrated database retrieval system