Oncorhynchus kisutch (coho salmon): 109902082
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Entry
109902082 CDS
T09179
Name
(RefSeq) collagen alpha-1(XXVIII) chain
KO
K23619
collagen type XXVIII alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oki01002
]
109902082
Peptidases and inhibitors [BR:
oki01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
109902082
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_3
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
109902082
NCBI-ProteinID:
XP_020353741
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Position
LG13:58936504..58953015
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AA seq
1187 aa
AA seq
DB search
MLRKDNMGKGVALFLLLLALLHEAIGQRRRKGKYSVLRDGENDMTTCSMEVAFILDSSEG
AKTFLFEKQKSFVLQFSTRLTMLQLSGWTLKLRMAALQYSSTVSVEHSFTAWQDLDVFHS
RVSSMAYIGHGTYSTYAITNATQLFTQETKEDSVRVAVLMTDGADHPRNPDVIGAAADAK
GSGVKLIAIGLSDLARQSQNSAKLRAIASTPAKQFVHSLTDPQLEEKLLKELGAIALEAC
PQAEVCLCERGERGPPGNPGTKGDPGYEGPSGPKGSRGEPGVGGRPGSDGLEGSPGYKGD
KGGIGDCGTPGGKGDEGPGGPPGPRGPRGDQGVNGPPGDQGPEGQTGPKGDQGTTGASGP
AGDIGIGFPGPKGAKGIQGRPGTLGPIGIGEPGQPGPPGLSGAQGNQGAVGEGFPGSKGD
RGHEGPRGERGLTGVGVKGDKGNPGQLGSQGLVGMPGEGIQGEKGNQGPVGPPGPRGNPG
VGLMGQKGSQGFSGEPGIPGESGVGEPGPKGDPGSEGLPGIPGLSGEDGDIGQKGDIGLH
GPRGPDGAPGKGVPGEKGDRGERGSRGQLGAVGPVGPMGAKGEPGSAGRAGTNGPTGRGL
PGIKGDPGAVGPPGHVGEPGIGITGPKGERGLPGPIGPPGLEGEGFPGTPGAPGVPGLTG
EIGPEGKGLPGPKGDRGTPGPTGLAGAPGVGLMGPKGSAGQIGAPGPQGLPGEGIQGPKG
ESGFQGIPGPRGPPGQGIQGDKGDRGIVGERGRKGDRGETGETGTAGPLGRLGEKGEPGL
TREEVIKLVRSICGCGVKCRESPLELVFVIDSSESVGPDNFNVVKDFVNALVDRASVSRE
TTRVGVVLYSHIDMVVVSLHQQASRDQVKKAVRTMTYLGEGTFTGSAIHQANQVFRAARP
GVRKVAIVITDGQADERDSVRLEEAVKEANGSNIETFVIGVVNQSDPLYEEFKKELHLMA
SDPDREHVYLIDDFRTLPTLESKLLSRICESDGGAQFSSIPSSRYSPGTPGQAGIVRETP
ERTDTDTPTFNGDFKKTHMVPGPPGESDRVFTPQGPQSGDQDNSETYRVPSFDREPFKRL
PEFLLPSEMKNPSHSVVMTGSQAPTQRPLTVKLPGLPPTSPPLPQDALIPDERCGQTLDP
GPCRNYFVKWYYDTTANACAQFWFGGCQGNQNRFESEKSCKKTCVKV
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgttgagaaaggacaacatggggaaaggagtggctctgttccttctactgttggcactt
cttcacgaggctataggccagagaagaagaaaaggaaagtacagtgtcctcagagatgga
gaaaatgacatgacaacatgctccatggaggtggccttcattctggacagttcggagggc
gccaagaccttcctgttcgagaagcagaagtcctttgttctgcaattcagcactcgtctc
accatgctccagttgtctggatggaccctaaagctgcggatggctgctctccagtacagc
agcactgtgtctgtagagcacagcttcactgcctggcaggacctggatgtgttccacagc
agagtcagctccatggcctacattggccatggcacctactccacctacgccatcaccaac
gccacacagctcttcacccaggagaccaaggaggacagcgtcagggtggcggtgctcatg
accgacggtgccgatcatccgaggaaccctgatgtgatcggagcagcggcggatgctaag
ggtagtggtgtgaagctcattgctatagggttgtcggacctggcccgccagagccagaac
agtgccaaactccgggctatcgccagcacaccggccaagcaattcgtccacagtctcact
gacccccagctagaggagaagttactgaaagagttgggtgcaatagcgcttgaggcgtgt
ccacaggctgaagtgtgtttgtgtgaaagaggggagagaggccctcctggaaacccaggt
acaaaaggagatccaggatatgaaggaccatctggtccaaaaggatcaaggggagaacct
ggagtcggtggccgaccaggaagtgatggtcttgagggcagtcctggttataaaggtgac
aagggggggataggagactgtggcacccctgggggaaaaggagatgaaggccctggagga
cctcctggcccacggggacctagaggagaccagggtgttaatggaccacccggggaccag
ggtccggagggccaaacaggacctaaaggggaccaaggaaccaccggtgcatctggacca
gcaggtgacattggcattgggttcccaggtccaaagggggccaaaggaattcagggaaga
ccaggaacccttggtcccattggcattggagagccaggacagccaggacccccaggactt
tctggagcacagggtaaccagggagctgttggggaggggttccctggctcaaagggggat
cgaggccacgagggccccagaggtgagcgtggtctcactggtgttggggtcaaaggtgat
aagggaaatcctggacagcttggatcacaaggactggtgggaatgccaggggaaggaatt
caaggagaaaaggggaaccaagggccagttggccctccaggccccagagggaatccaggt
gtgggacttatgggccaaaagggaagccaaggcttctcaggtgagcctggaatcccaggg
gagagcggtgttggcgagccaggacctaaaggagacccaggatcagaggggttacctggt
attccgggcctctctggagaggatggagacataggacagaagggtgacattgggttacat
gggcccaggggacctgatggggcacccggaaaaggtgtccctggagaaaagggggaccga
ggggagcggggctccaggggccagctaggggcagtagggcctgtggggccaatgggggcc
aagggtgaacccggaagtgctggacgagcaggtacaaacggaccaactgggcgggggtta
cccggtatcaagggggaccctggtgcggtaggcccacccggacatgttggtgaaccagga
ataggaatcactggaccgaagggtgagagagggctaccagggcccattggtccacctggg
cttgaaggggaaggctttcctggaactccaggagcccctggagtaccaggattgacaggt
gagattggaccagaaggaaaaggtttacctggtcctaagggagaccggggaactccaggc
cccacaggactagctggagcaccaggagttgggctaatgggccccaaggggtcagctggt
cagattggagcaccgggtccccagggactgcctggagagggcattcaaggaccaaagggg
gagtcaggattccaggggatcccgggccccagggggcccccaggacagggtattcaaggg
gataagggagacagggggatcgtgggtgaacgaggcagaaagggggacaggggagagact
ggagagacaggaactgctggacctttgggcagactgggagaaaaaggggaacctggccta
acaagagaggaggtcatcaaactggtcagatctatatgtggttgtggggtgaagtgccgt
gagagcccactggagttggtctttgtgattgacagctcagagagtgtgggccctgacaac
ttcaacgtggttaaggactttgtgaacgctctggtcgaccgtgcctccgtgagccgggag
accactcgcgtcggggtggtcctctacagccacatcgacatggtggtggtcagtctgcac
cagcaagccagccgggaccaggtgaagaaggcggtccgcactatgacctacctgggcgaa
ggcactttcacgggcagcgccatccatcaggccaaccaggtgttccgggcggccaggccc
ggggtgaggaaagtggccatagtgatcacagatggacaggcggacgagagggactctgtg
aggctggaggaggcagtgaaagaggccaatggcagtaacattgagacgtttgtcatcggg
gtggtgaaccagagtgatccgctgtacgaggagtttaagaaagagctccacctcatggcc
tctgacccagacagggaacatgtctacctgattgatgacttcaggacacttcctaccctt
gagagcaagctgctgagtcggatctgtgagagtgatggcggtgcccaattcagctccatc
cctagctccagatactcccccggaacccctggacaagccgggattgtcagggaaacccca
gagaggactgatactgacacgcccactttcaatggagactttaaaaaaacacatatggtg
ccaggtccaccaggagagtcagacagagtctttaccccacagggcccccagtccggggac
caagataactcagagacctacagggtcccatcctttgacagggaacccttcaagcgccta
ccagagttccttcttccgtcagagatgaagaacccctcccacagtgtggtcatgacgggc
tcccaggccccaacccagaggccccttaccgtaaagctacccgggctccccccaacctct
ccacctctgccccaggatgctttaataccggatgagagatgtggacagactctggacccc
gggccttgcaggaattactttgtgaagtggtactatgacactacggctaatgcctgtgcc
cagttctggttcggaggttgtcagggaaaccaaaaccgatttgagtcggagaagagctgc
aaaaaaacctgtgtgaaggtctaa
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