Oncorhynchus kisutch (coho salmon): 109902102
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Entry
109902102 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109902102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oki03041
]
109902102
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109902102
Spliceosome [BR:
oki03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109902102
Complex C
U4/U6.U5 tri-SnRNP related factors
109902102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
Cas3-like_C_2
AAA_19
AAA_30
nSTAND3
SRP54
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-GeneID:
109902102
NCBI-ProteinID:
XP_031642538
Ensembl:
ENSOKIG00005018388
LinkDB
All DBs
Position
LG13:58172757..58191225
Genome browser
AA seq
1052 aa
AA seq
DB search
MANLEQWVSDSLHDILGLSDRYVAQFMIGSARKSLSAQDFVAHLKSTGTIDINQRVIAFA
QELYEKIPRKQVVEKPARAIERRVMEIERKNRNYTLLSDSESDGEAVREKEKKKSKDRGD
KRKHLRKREESQSSSEEETRKSSKLGHGDQKSSKKDEEEEEEEWEKEERERVLDLEERDA
FAERMKLKDKDKTRNIMERTDKKGYEEAQKRLKMAEEDHKKILPELRKESRRNYLSKREA
EKLEDLEAEIADEEYLFSTDALTERERKELEYKRNLRDLAKDYKKAGAKEKEERKNRYYM
PEEKRSKDIPQRDMELELEMPMEGGGEQGRWEEERLKTASLSFGAKKEREKGLKAEREKY
QLILEEDEIINFVSSAVIMKGTQDETEQEQAALSQAEVQKQSIQEVRRSLPVFPYREDLL
LAIQQHQILVIEGETGSGKTTQIPQFLMESGYNDGGMKIGCTQPRRVAAMSVAARVAQEV
GVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTLHT
DILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEA
DYLEACVVSVLQIHVTQPPGDCLVFLTGQEEIETCCELLQERCRRLGSKISELLVLPIYA
NLPSDMQAKIFSPTPPGSRKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESL
IVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEESTVPEIQRTNLGNVVLLLKS
LGINDLIHFDFMDPPPHETLVLALEQLXALGALNHLGELTKLGRRMAELPVDPMLSKMIL
ASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARQNFVVPGGDHMVLLNVYTQWL
ESGYSTQWCYENFIQFRSMKRARDVREQLEGLMDRIEVEVCSSGGDIVPIRKAVTAGYFY
HTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSSWLL
EVAPHYYKNKELEDSSSKKMPRKQGKAKEELG
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctagagcaatgggtgagcgacagtctgcacgacatcctcggccttagtgac
agatatgtcgcccagttcatgatcggctctgcgcgtaaatccttgagcgctcaagacttt
gtggcccacctcaagtcaacgggcaccatcgacattaatcagagagtgatcgcctttgca
caggaactatatgaaaagattcctcgtaaacaagtcgttgaaaagccagccagagcgata
gagcgacgtgtcatggagattgagaggaagaatcgaaattacaccctactgtcggacagc
gagagtgacggagaggcggtgagggagaaggagaagaagaaaagtaaagaccgaggcgat
aagaggaagcacctcaggaaaagggaggagagtcaatcatctagtgaagaggagacccgt
aaaagtagtaagctgggccatggcgaccagaagtccagtaagaaggatgaagaggaggag
gaggaggagtgggagaaggaagagagagaacgcgtactggatctggaagagagggatgcc
tttgccgaacgaatgaaactgaaggacaaagacaagacgaggaacatcatggagagaacg
gacaagaagggctacgaggaggctcagaaaagactaaagatggcggaggaggatcacaag
aaaatccttccagagttgaggaaggagtctcgcaggaactacctgtccaagagagaggct
gagaagctggaggacctggaggcggagatagccgacgaggagtacctgttctccacagac
gcgctgacggagagggagcggaaggagctggagtacaagcgcaacctcagagacctggcc
aaggactacaagaaagccggcgccaaggagaaggaggagaggaagaacagatactacatg
ccggaggagaagaggagtaaagatattcctcagagggacatggagctggagttggagatg
cccatggagggtggaggagagcagggtcgctgggaggaggagaggttgaagaccgcctcg
ctcagcttcggggccaagaaagagagggagaaagggttgaaggcagaaagagagaagtac
cagttgatcctggaggaggatgagattatcaactttgtcagcagtgccgtcatcatgaag
ggaacccaggatgagacggagcaggagcaggcagccctgtcccaggcggaggtccagaag
cagtccatccaggaggtgagacgcagcctgcccgtgttcccctacagagaggacctgctc
ctggccatccagcagcaccagatcctggtcatcgagggagagacgggctccggcaagacc
acccagatcccacagttcctcatggagtcgggctacaatgatggaggcatgaagattggg
tgtacccagccccgtagagtggcagccatgtccgtagcagccagggtggcacaagaagtg
ggcgtcaagctgggcaacgaggtaggctacagtatccgttttgaggactgtacatcggag
aggacagtactcaaatacatgactgacgggatgctgctcagggagttcctcacagagcct
gatctggccagctacagtgtggtcatcatcgatgaggctcacgagcggacgctgcacaca
gacatcctgtttggcctgatcaaggacatcgcccggttccgtccggacctgaaggtgctg
gtggccagcgccaccctggacacagagcgcttctcctgcttcttcgatgacgcccctgtc
ttcagaatccccggcaggaggttccctgtggacatcttttacactaaggctcctgaggca
gactacctggaggcctgtgttgtgtcggtgctacagatccacgtcacacagccccccgga
gactgtctggtcttcctcactggacaggaggagattgagacttgctgtgagctgctgcag
gagagatgcaggcgtctgggctctaagatatctgagcttttggtgcttcccatctacgcc
aacctaccttcagacatgcaggccaagatcttcagccccacaccacctggctcacgcaag
gtggtggtagccactaacattgcagagacctctctaaccatcgatggaatcatatacgtc
atagatccaggcttctgcaagcagaagagctataacgcccgcactgggatggagtctctg
attgtcacgccttgctcacgggcctcagccaatcagcgagcaggtcgtgcaggcagagtg
gctgctgggaagtgtttccgtctctacactgcgtgggcgtttaaacacgagatggaggag
tccaccgtgcccgagatccagcgaaccaacctgggcaacgtagtgctactgctcaagagc
ttgggaattaatgaccttatccactttgacttcatggacccgccccctcacgagaccctg
gtgctagctctggagcagctgtaggcactgggtgcactcaaccacctcggagagctcacc
aagttgggccgcaggatggctgagctgccggtggaccctatgctgagcaagatgatcctg
gcctcagaacagtataagtgttctgaggaggtgttgaccattgctgcaatgctgtctgtg
aacaactccatcttctaccggcccaaagacaaggtggttcacgctgacaacgccaggcag
aactttgtggtccccggaggagaccatatggtgttgctcaacgtctacacacagtggctg
gagagtggctactccacccagtggtgctatgagaacttcatccagttccgctccatgaag
cgggcgcgggatgtcagggagcagctggagggcctgatggacaggatcgaggtggaggtg
tgcagctcaggcggcgacattgtgcccatccgcaaggcagtgacggcggggtacttctac
cacacggcacggcttagcaaggggggctacaagacggtgaagcaccagcagacagtctac
gtccaccccaacagctccctgttcgaggagcagccccgttggctcatctaccatgagctg
gtcttcactaccaaggagttcatgagacaggtgattgagatagacagcagctggctgctg
gaggtggctccccactactacaagaacaaggagctggaggacagcagcagtaagaagatg
cctcgcaaacagggcaaggccaaggaagagctgggctaa
DBGET
integrated database retrieval system
