Oncorhynchus kisutch (coho salmon): 109902330
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Entry
109902330 CDS
T09179
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109902330
03041 Spliceosome [BR:
oki03041
]
109902330
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
109902330
Spliceosome [BR:
oki03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
109902330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
109902330
NCBI-ProteinID:
XP_031642156
Ensembl:
ENSOKIG00005016698
UniProt:
A0A8C7GCI5
LinkDB
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Position
LG13:42674592..42698421
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AA seq
613 aa
AA seq
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MDGRLETDLYPMGSTYVTELDSVHDITVGTKRGSDELFSCVANGPYIMTSAAANGNDSKK
FKGDIRGPGIPSRVIHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEDA
AQTMVSYYSSVTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQAGGMPMAG
GMPMAGGMPMAGGMPMAGGMPMAGGMPMAGGMPMAGGMPMAGVDASGGMGGHSPVLRVIV
ENLFYPVTLDVLHQIFSKLGTVLKIITFTKNNQFQALLQYSDGLTAQHAKLSLDGQNIYN
ACCTLRINFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPSIDHQAMAAAFGEYYGAPGII
SANPYAGAHAFPPAFAIQQATGLTMHGVPGGLAQLTMPVAAAAAAAGRMGFHQLSGGHCV
MLVSNLNPERVTPQCLFILFGVYGDVMRVKILFNKKENALIQMSDGTQAQLAMSHLNGQR
LHGKALRVTLSKHTNVQLPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSATLHL
SNIPPSVVEDDLKMLFASSGAMVKAFKFFQKDRKMALVQMSSVEEAIESLIEFHNHDLGE
NHHLRVSFSKSTI
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgtctagagactgatttgtatcctatgggatctacttacgtcactgaacta
gacagtgtccacgatattacagttggtacaaagagaggatcagacgagcttttctcctgc
gtggcaaacggaccctatataatgaccagcgcagcagccaatggcaacgacagcaagaag
ttcaaaggtgacataaggggcccgggcatcccgtcgcgcgtcatccacgtgcgcaagctc
cccaacgacatcaacgaggccgaggtcatctccctgggcctgccctttggcaaagtcacc
aacctgctcatgctcaaaggaaaaaaccaggccttcatagagatgaacaccgaggatgca
gctcagaccatggtcagctactactcctcggtgacgccggtcatccgcaaccaccccatc
ttcatgcagtactccaaccacaaggagctcaagacggacaactcccccaaccaagtgaga
gcccaggcggcactgcaggcagtgaacgcagtccaggcagggggcatgcccatggcaggg
ggcatgcccatggcagggggcatgcccatggcagggggcatgcccatggcagggggcatg
cccatggcagggggcatgcccatggcagggggcatgcccatggcagggggcatgcccatg
gcaggggttgatgcctcagggggcatgggtgggcacagccctgtgctgcgcgttatagtg
gagaacctgttctacccagtcaccctggacgtgctgcaccagatcttctctaagctcggc
acagtgctgaagattatcacctttaccaaaaacaaccagttccaggccctgctgcagtac
tcggacggtctgaccgcgcagcacgctaaactgtctttagatgggcagaacatctacaac
gcctgctgcaccctccgcatcaacttctccaagctgaccagcctgaacgtgaagtacaac
aacgacaaaagccgcgactacacgcggcctgacctgcccacgggagacagccagccctcc
atcgaccaccaggccatggctgcagccttcggtgagtactatggtgctcctgggatcatc
tcagccaacccatacgcaggagctcatgccttccccccggcattcgccattcagcaagct
acaggcctgacgatgcacggtgtccctggaggcctggctcaactgaccatgcccgtggct
gcagccgcggcggctgcaggcagaatgggcttccaccaactctccggtggccactgtgtc
atgctggtcagcaacctcaacccagagagagttacgccccaatgcctctttattcttttc
ggtgtatatggtgatgtgatgagagtgaagatcctgttcaacaagaaggagaacgctctg
atccagatgtctgatgggactcaggcgcagctagcaatgagccacctaaatggccagagg
ctccacgggaaagcgctgcgtgtcaccctgtccaaacacaccaatgtccagctgccccgc
gagggccatgaggaccagggcctgacaaaggactacagcaactcacccctgcaccgcttt
aagaagcccggctccaagaactactctaacatattccctccctcagccaccctgcacctc
tcaaacatccctccctctgtggttgaggatgacctcaagatgctgtttgcgagctccggt
gcaatggtcaaggccttcaagttcttccagaaagaccgcaagatggccttggtccagatg
agctcagttgaggaggccatagagtccctcatcgagttccacaatcacgacctgggtgag
aaccaccacctgagggtctccttctccaaatctaccatctga
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