Oncorhynchus kisutch (coho salmon): 109902372
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Entry
109902372 CDS
T09179
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03013
Nucleocytoplasmic transport
oki03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109902372
03015 mRNA surveillance pathway
109902372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109902372
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109902372
5.6.2.5 RNA 5'-3' helicase
109902372
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109902372
mRNA cycle factors
Common to processing body (P body) and stress granule
109902372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
ATPase
SLFN-g3_helicase
nSTAND3
NPHP3_N
Helicase_RecD
DEAD
AAA_16
AAA_22
UvrD_C_2
SRP54
Motif
Other DBs
NCBI-GeneID:
109902372
NCBI-ProteinID:
XP_020354257
Ensembl:
ENSOKIG00005014468
LinkDB
All DBs
Position
LG13:41118341..41140101
Genome browser
AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGHTQSQLDNQVNG
PNEGLHNGGVDDVAKASQILSELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVETTHDYQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYQLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLTNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSSFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
RPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQIGMIGTGPA
HMAAMNMPIPFNLVVPPMPPPGYLAQANGPAAGRGGVLKSKAGRGGRQRTRGMGNHGSSG
QANGHNSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagcgtacgggccgagttctcaaacgctcaccttcctggacaccgaagaa
gcggagctacttggagcagatacccagggctcggagtacgagtttaccgattttacccta
cctagccagacacaaactcaaggccacacccagagtcagctggacaatcaggtgaatggt
cctaatgaagggcttcacaatggaggggttgatgatgttgccaaggcgagccaaattctc
tctgagttgaactttgaggaggatgaagaggacacctattacactaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcgtgtgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatcgtaaaccacttg
gtgagagccaaatgcaaagaggtgactctgcacaaagacgggccgttgggcgagacagtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatacccgccaag
gccgactctgtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaaa
gacataaactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtcc
tggctggtaaagatcccctcggagcaggagcagctccgggcccgacagattaccgcccaa
cagatcaacaagctagaggagctctggaaggacaatccaacagccactctggaggatctg
gagaagcccggtgtagatgaggagcctcaacatgtgctgctgcgctacgaggatgcctac
cagtaccagaacatcttcggcccccttgtcaaactggaggccgactacgacaaaaagctt
aaagagtcccagacccaagataatataacggtcaggtgggacctggggctgaataaaaag
cggattgcctatttctccttgcccaagacggattcaggtgacatgcggctgatgcaggga
gatgagatttgtctgcgctacaaaggagacctggctccactttggaaaggcatcggccat
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgtcggagcacctgtggaaacaacccacgactaccaggtggatttcgtg
tggaagtccacttcctttgacagaatgcagagtgccctgaagacctttgctgtggacgag
acgtccgtgtcaggctacatctaccacaaactgctgggccacgaggtggaggatgtcatc
atcaagtgtcagctgcccaaacgcttcactgcccagggcctacccgatctcaaccactct
caggtgtatgctgtgaagactgtgctgcaaagacccctcagtcttatccaaggcccccct
ggcactgggaaaactgtcacctctgccaccatagtgtaccagctcgccaggcagggcaac
ggacccgtgctggtgtgtgctcccagtaacatcgcggtggaccagctgactgagaagatc
cacatgtcaggtctgaaggtggtccggctgtgtgctaagagcagagaggccatcgactcc
cccgtctcattcctggcgctgcacaaccagatccgcaacatggacagtatgccagagttg
cagaagctgcagcagctgaaggatgagaccggggagctgtcgtctgctgacgagaagcgt
taccgggccctgaagcgcaccgctgagcgagagctgctcacgaatgcggatgtgatctgc
tgtacctgtgtgggggcaggagatccacgcctggccaagatgcagttccgctccatcttg
attgatgagagcacccaggccaccgagccagagtgcatggtgcctgtggtcctgggtgcc
aagcagctcattctggtgggagaccactgccagctgggcccagtagtgatgtgtaagaag
gcagccaaagcaggcctgtcccagtctctgtttgagcgtctggtggtgctgggcatcagg
cccattcgtctgcaggtgcagtaccgtatgcacccggcccttagctctttcccctccaac
atcttctacgagggctccctgcagaacggagtcaccgctgctgaccgcatcaagaaaggc
tttgacttccagtggccgcagccagacaagcccatgttcttctatgtaactcaaggccag
gaggaaatagccagctctggaacgtcctacctgaatagaactgaggcggccaacgtggag
aagatcacaaccaggctgctgaaggctggggccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagttcagtggttccctccat
acaaaactctaccaggaggttgagatcgccagcgtggacgcgttccagggcagggagaag
gactttatcatcctgtcgtgcgtacgagccaacgagcaccagggcatcggcttcctcaat
gacccgcgacgtctcaacgtggccctcaccagagccaagtatggggtgatcattgtgggc
aacccaaaggccctgtccaagcagcctctgtggaaccaccttctcaactactacaaggag
cagaaggttctggtggagggacccctcaacaacctgagagagagcctgatgcagttcagc
aggccccgcaagctggtcaatgccatcaaccctggagcccggttcatgagcactgccatg
tatgatgcccgtgaggccctcatccctgggtctgcctacgatcgcagcagcgcagggcgt
ccatccaacatgtatttccaaacccacgatcagatcggcatgattgggactgggccagcc
cacatggcggccatgaacatgcctattcccttcaacttggtggtgccccccatgcctccg
ccaggctacctggcccaggccaacggccctgctgcaggtcgtggtggggtgctgaagagc
aaagcggggcgtggcgggcgccagaggacccgcggcatggggaaccacggtagcagcggg
caagccaacgggcacaacagccaggctagccaggacgtatcttcccagcccttctcccag
gggccactcacccagggctacatcaccatgagtcagccctcccagatgagccagcctggc
ctctcccagcctgaactttcccaggacagttatttaggtgacgagttcaagtcccagatc
gacgtggctctgtcgcaggattcgacttaccagggtgaacgtgcataccaacatggtgga
gtgactggactgtcacagtactag
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