Oncorhynchus kisutch (coho salmon): 109902375
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Entry
109902375 CDS
T09179
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X2
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109902375
09123 Folding, sorting and degradation
03018 RNA degradation
109902375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109902375
03041 Spliceosome [BR:
oki03041
]
109902375
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109902375
mRNA degradation factors
5'-3' decay
Lsm complex
109902375
Spliceosome [BR:
oki03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109902375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
109902375
NCBI-ProteinID:
XP_020354262
Ensembl:
ENSOKIG00005014420
LinkDB
All DBs
Position
LG13:complement(41100411..41120026)
Genome browser
AA seq
147 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGAGRGVFGGRGRG
MPGVGRGQQQQEKKPGGGKPQGVKNQH
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgctacctctatctctgctgaagactgcacagaaccaccctatgctggtggagttgaag
aatggagagacgtataacggacacttggtcagttgtgacaactggatgaatatcaactta
cgagaagtcatctgcacctcgagggatggagataagttttggaggatgcccgagtgttac
atcagaggaagcaccataaagtacctgcgtatccctgatgaaatcatcgacatggtaaag
gaggaggtggtgtccaagggccgcgggcgaggaggcatgcagcagaacaaacagcagggc
aagggccgggggggaggagcaggagcaggtagaggtgtatttggaggccgtggccggggt
atgccaggagtgggcagaggccagcagcagcaggagaagaagcctggtggtggcaaacct
cagggagtcaagaaccagcactga
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